Skip to main content
. 2014 Jul 15;9(7):e101840. doi: 10.1371/journal.pone.0101840

Table 2. Molecular interactions of phytochemicals with the active site residues in the binding site 2 of target proteins, MexB of P. aeruginosa and AcrB of E. coli.

Phytochemical (Pubchem ID) H-bond Hydrophobic contacts Glide XP Gscore (Kcal/mol) Glide energy (Kcal/mol) MM-GBSA (Kcal/mol)
MexB Site 2 MC-207,110 N—H—(Asn718) N—H—(Glu816) N—H—(Glu825) N—H—(Phe617) Lys134, Arg716, Phe666, Gly828, Pro717, Phe136, Phe573, Lys814, Gly719 −8.39 −48.74 −57.23
Lanatoside-C (3879) (Arg714)N—H—O O—H—O (Asn676) (Gln575)N—H—O O—H—O (Asn718) (Ser721)O—H—O Phe664,Arg716, Gly719, Ser721, Phe617, Asn718, Pro717, Leu827 −8.74 −58.12 −30.76
Scopolamine (5184) O—H—O (Asn676) Gln575, Asn718, Leu827, Lys134, Phe617 −6.19 −31.524 −29.53
Umbelliferone (5281426) (Gly719)O—H—O (Gln575)N—H—O Phe664, Ala618, Met720, Arg716, Asn718 −3.20 −23.95 −53.46
AcrB Site 2 MC-207,110 N—H—O(Ser134) N—H—O(Glu826) N—H—O(Glu826) N—H—O(Asp681) N—H—O(Glu673) N—H—O(Glu673) Leu828, Phe664, Phe666, Phe617, Val672, Asn719 −7.48 −58.68 −42.67
Lanatoside-C (3879) O—H—O (Ala831) O—H—O (Gln830) (Gln657) Phe617, Phe664, Arg716, Pro717, Leu827 −9.12 −60.744 −88.50
Scopolamine (5184) O—H—O(Ala665) Lys134, Gln575, Ala618, Phe617, Arg716, Asn718, Leu827 −4.19 −34.05 −38.64
Umbelliferone (5281426) (Gln675)N—H—O O—H—O(Gly789) Ala618, Phe664, Arg716, Pro717, Asn718 −3.72 −19.279 −40.80