Table 2. Lookup table for unstable triloops and stable tetraloops and hexaloops.
Hairpin | Ref(s). | ΔG°37 loop, kcal/mol |
---|---|---|
CAACG | 87 | 6.8 |
GUUAC | 87 | 6.9 |
CAACGG | 48 | 5.5 |
CCAAGG | 48 | 3.3 |
CCACGG | 48 | 3.7 |
CCCAGG | 48 | 3.4 |
CCGAGG | 48 | 3.5 |
CCGCGG | 48 | 3.6 |
CCUAGG | 48 | 3.7 |
CCUCGG | 48 | 2.5 |
CUAAGG | 48 | 3.6 |
CUACGG | 47, 50 | 2.8 |
CUCAGG | 48 | 3.7 |
CUCCGG | 47 | 2.7 |
CUGCGG | 47 | 2.8 |
CUUAGG | 48 | 3.5 |
CUUCGG | 47, 50 | 3.7 |
ACAGUACU | 86 | 2.8 |
ACAGUGCU | 86 | 2.9 |
ACAGUGAU | 86 | 3.6 |
ACAGUUCU | 86 | 1.8 |
For extra stable hairpins measured in 0.1 M Na+ (48, 87), placement was determined by assuming that the relative stability of loops remains constant between 0.1 and 1 M Na+. All values are based on experimental results rather than frequencies of occurrence as used in ref. 8. Unpaired nucleotides are shown in bold.