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. 2014 May 28;15(6):9497–9518. doi: 10.3390/ijms15069497

Table 1.

Identification of partial 16S gene sequences from excised bands observed in denaturing gradient gel electrophoresis (DGGE) profiles.

Source BlastN reference strains RDP tassonomic classifier

Closest relative strain Similarity (%) GenBank accession number Most probabile taxon Similarity (%)
Sludge Paracoccus sp. 92 AY646160 Alphaproteobacteria 99
Novosphingobium sp. 99 EU430056 Alphaproteobacteria 100
Novosphingobium aromaticivorans 93 JF459981 Alphaproteobacteria 100
Novosphingobium sp. 96 FM886872 Alphaproteobacteria 100
Alpha proteobacterium 91 AB578881 Alphaproteobacteria 100
Sphingomonas sp. 99 AJ617690 Alphaproteobacteria 100
Sphingomonas sp. 89 GQ181132 Alphaproteobacteria 97
Sphingobacteriaceae bacterium 97 FJ386545 Bacteroidetes 100
uncultured Niastella sp. 98 GU326307 Bacteroidetes 100
Flavobacteriales bacterium 95 EF636194 Bacteroidetes 100
uncultured Oxalobacteraceae bacterium 91 HM141157 Betaproteobacteria 100

Fouled membranes uncultured Xanthomonadalesbacterium 89 EF073609 Gammaproteobacteria 99
uncultured Gammaproteobacteria bacterium 99 CU926678 Gammaproteobacteria 100
Rhodanobacter sp. 99 EU876661 Gammaproteobacteria 100
Rhodanobacter sp. 97 EU876661 Gammaproteobacteria 100
uncultured Betaproteobacterium 97 JF703550 Betaproteobacteria 100
uncultured Comamonas sp. 89 JF808874 Betaproteobacteria 99
uncultured bacterium 98 AB241559 Bacteroidetes 100
uncultured Acidobacteria bacterium 98 HM062044 Acidobacteria 100
uncultured Betaproteobacterium 89 FJ184029 unclassified bacteria 98