Table 3.
Steady state kinetic parameters for selected pNBE variants of the DE library.
| Substrate | Benzoylthiocholinea | Butyrylthiocholineb | ||||
|---|---|---|---|---|---|---|
| Enzyme | kcat (1/min) | Km (mM) | kcat/Km(1/min*mM) | kcat (1/min) | Km (mM) | kcat/Km(1/min*mM) |
| WT | 70 ± 9 | 1.2 ± 0.3 | 58 ± 16 | 130 ± 10 | 5.4 ± 0.8 | 24 ± 4 |
| A107H | 13 ± 1 | 0.6 ± 0.2 | 22 ± 7 | 35 ± 8 | 17 ± 5 | 2.0 ± 0.9 |
| A107H Ω Loop | 8 ± 1 | 0.9 ± 0.3 | 9 ± 3 | 10.4 ± 0.9 | 8.0 ± 0.7 | 1.3 ± 0.2 |
| A107K | 570 ± 50 | 1.4 ± 0.2 | 410 ± 70 | >20 | >8c | – |
| A107Q | 40 ± 4 | 1.0 ± 0.2 | 39 ± 9 | 40 ± 10 | 19 ± 7 | 2 ± 1 |
| A107R | 90 ± 20 | 5 ± 1 | 20 ± 6 | >50 | >8c | – |
| A107S | 39 ± 9 | 1.4 ± 0.6 | 30 ± 10 | 780 ± 30 | 14.4 ± 0.7 | 54 ± 3 |
| A107T | 36 ± 3 | 0.6 ± 0.2 | 60 ± 20 | 240 ± 30 | 11 ± 2 | 22 ± 5 |
| A107V | 38 ± 4 | 0.5 ± 0.2 | 80 ± 30 | 56 ± 8 | 8 ± 2 | 7 ± 2 |
| A107Y | 21 ± 2 | 0.6 ± 0.1 | 35 ± 8 | 45 ± 5 | 6.0 ± 0.9 | 7 ± 1 |
| A107H/A190G | 29 ± 4 | 0.9 ± 0.3 | 30 ± 10 | 50 ± 30 | 11 ± 7 | 5 ± 4 |
| A107H/A190R | 12 ± 1 | 0.6 ± 0.2 | 20 ± 7 | 200 ± 30 | 13 ± 2 | 15 ± 3 |
| A107S/A190G | 23 ± 4 | 2.2 ± 0.6 | 10 ± 3 | 90 ± 30 | 11 ± 4 | 9 ± 4 |
| A107V/A190G | 21 ± 2 | 0.6 ± 0.1 | 35 ± 7 | 45 ± 5 | 6.0 ± 0.9 | 8 ± 1 |
| A107H/A400D | 80 ± 10 | 2.1 ± 0.6 | 40 ± 10 | 190 ± 60 | 11 ± 5 | 18 ± 9 |
| A107H/A190S/A400S | 6.4 ± 0.9 | 0.8 ± 0.2 | 9 ± 3 | 115 ± 14 | 9 ± 1 | 13 ± 3 |
Benzoylthiocholine and butyrylthiocholine were used as substrates. Specific activities of the other variants are shown graphically in the Supplemental Information.
Benzoylthiocholine has limited solubility in DMSO, the highest substrate concentration tested was 2.5 mM.
Butyrylthiocholine was also a poor substrate of pNBE, and Km values were in the mid-millimolar range. Saturation was not achieved at the highest substrate concentration tested (8 mM). Km values were extrapolated from double reciprocal plots.
Saturation was not achieved at [S] = 8 mM, and the plot of velocity vs. [S] was linear. Extrapolated Km's exceeded 40 mM.