Table 3.
Proteins involved in nodulation and biological nitrogen fixation in Burkholderia phenoliruptrix BR3459a
| NodA | NodB | NodC | NodD | FixA | FixB | FixC | FixX | NifH | NifD | NifK | NifE | NifN | NifB | NifQ | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Betaproteobacteria | |||||||||||||||
| B. ambifaria MC40-6 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| B. cenocepacia HI2424 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | + |
| B. cenocepacia J2315 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | + |
| B. glumae BGR1 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| B. multivorans ATCC 17616 | - | - | - | - | ++? | ++? | - | - | - | - | - | - | - | - | + |
| B. phenoliruptrix BR3459a | + | + | + | + | + | + | + | + | + | + | + | + | + | + | + |
| B. phymatum STM815 | + | + | + | + | + | + | + | + | ++ | + | + | + | + | + | + |
| B. phytofirmans PsJN | - | - | - | - | - | - | - | - | +p | - | - | - | - | - | - |
| B. pseudomallei 1710b | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| B. vietnamiensis G4 | - | - | - | - | + | + | + | + | + | + | + | + | + | + | + |
| B. xenovorans LB400 | - | - | - | - | + | + | + | + | + | + | + | + | + | + | + |
| Burkholderia sp. CCGE1001 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| Burkholderia sp. CCGE1002 | + | + | + | + | + | + | + | + | + | + | + | + | + | + | + |
| Burkholderia sp. CCGE1003 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| Cupriavidus taiwanensis LMG 19424 | + | + | + | + | + | + | + | + | + | + | + | + | + | + | + |
| Alphaproteobacteria | |||||||||||||||
| Azorhizobium caulinodans ORS 571 | + | + | - | + | + | + | + | + | + | + | + | + | + | + | + |
| Rhizobium etli CFN 42 p42d | + | + | + | + | + | + | + | + | + | + | + | + | + | + | + |
| Ensifer meliloti 1021 pSymA | - | + | + | + | + | + | + | + | + | + | + | + | + | + | - |
| Bradyrhizobium japonicum USDA110 | + | + | - | + | + | + | + | + | + | + | + | + | + | + | + |
| Rhizobium loti MAFF303099 | |||||||||||||||
| Rhizobium leguminosarum bv viciae 3841 pRL10 | + | + | + | + | + | + | + | + | + | + | + | + | + | + | - |
| Bradyrhizobium BTAi1 | - | - | - | - | + | + | + | + | + | + | + | + | + | + | + |
| Bradyrhizobium ORS278 | - | - | - | + | + | + | + | + | + | + | + | + | + | + | + |
| Xanthobacter autotrophicus Py2 | - | - | - | + | + | + | + | + | + | + | + | + | + | + | + |
| Rhizobium sp NGR234 | - | - | - | + | + | + | + | + | + | ++ | + | + | + | + | + |
| Rhodopseudomonas palustris BisA53 | - | - | - | - | + | + | + | + | + | + | + | + | + | + | + |
| Agrobacterium tumefaciens C58 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| Aurantimonas SI85 9A1 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| Agrobacterium radiobacter K84 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| Agrobacterium vitis S4 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
Presence and absence of the B. phenoliruptrix proteins related to nodulation and biological fixation processes in comparison with some Beta- and Alpha-proteobacteria . ++? proteins not identified by BLAST, but present in the Uniprot database (with more than one copy); +p partial sequence identified; ++ two sequences identified for the described protein.