Skip to main content
. 2014 May 8;7(Suppl 1):S9. doi: 10.1186/1755-8794-7-S1-S9

Figure 3.

Figure 3

The organization of blocks in the modified SW alignment function. The dimensions of a block and a grid is 32 × 8 × 1 and (Nq-132+1)×1×Nr, respectively. Here, the ⌊*⌋ function takes the largest integer that is less than *, and Nq and Nr are the number of queries and references that can be fitted in device memory, respectively. For example, Nq = 128 and Nr = 9 in this case.