Table 5.
RBS | 1 GPU | 2 GPUs | 4 GPUs | miRanda on CPU | 4GPUs vs. CPU | |||
---|---|---|---|---|---|---|---|---|
Time | GCUPs | Time | GCUPs | Time | GCUPs | Time | Speedup | |
8 | 8.87 | 0.52 | 4.7 | 0.99 | 2.94 | 1.59 | 177 | 60x |
16 | 4.49 | 1.04 | 2.48 | 1.88 | 1.62 | 2.88 | 109x | |
32 | 2.59 | 1.8 | 1.92 | 2.44 | 1.39 | 3.38 | 127x | |
64 | 2.57 | 1.82 | 1.63 | 2.87 | 1.27 | 3.68 | 139x |
The impact of different RBSs on the GPU performance, where reference and query datasets have 256 and 32 sequences, respectively. Time was measured in seconds.