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. 2014 Mar 17;15:34. doi: 10.1186/1471-2156-15-34

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Copyright © 2014 Randhawa et al.; licensee BioMed Central Ltd.

This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/2.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly credited. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated.

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Density distribution of false discovery rate (q-values) of SNPs in significant clusters (orange) and the rest of the genome-wide SNPs (gray). Density plots are shown for polled cattle (A), double muscle cattle (B), polled sheep (C) and double muscle sheep (D). Vertical dashed (−−−−−) lines indicate q-values (FDR) = 0.05 in each subset. q-values were calculated from the calibrated p-values. Histograms of the mean Z, empirical and calibrated p-values are shown in Additional file 7: Figure S4. Relationship between q-values and calibrated p-values is shown in Additional file 8: Figure S5.