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. Author manuscript; available in PMC: 2014 Jul 17.
Published in final edited form as: Curr Protoc Bioinformatics. 2012 Mar;0 10:Unit10.8. doi: 10.1002/0471250953.bi1008s37

Figure 5.

Figure 5

Detailed side-by-side alignment information for the query cDNA and target genome sequence for the first match in Protocol 1. The figure shows the first block of the first alignment between the query and target genome divided in sections of 50 nucleotides. In each section, the top line represents the query cDNA NM_000531.5, and the line beneath it represents the human genomic DNA, chromosome X. In this block, the NM_000531.5 cDNA query nucleotides with coordinates from 1 to 291 align with human chromosome X nucleotides (in the Feb 2009 GRCh37/hg19 assembly) from 38211736 to 38212026. The identity, shown by a vertical bar between the query and genome nucleotides, is 100%. Details can be found in the text.