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. Author manuscript; available in PMC: 2014 Jul 17.
Published in final edited form as: Curr Protoc Bioinformatics. 2012 Mar;0 10:Unit10.8. doi: 10.1002/0471250953.bi1008s37

Figure 9.

Figure 9

Detailed alignment information for the first match of the query protein and chromosome 11 sequences in Protocol 2. The protein query NP_000509.1 sequence is listed at the top, and the region of the chromosome 11 sequence that aligned to the query is shown below it. In this match, all of the query sequence was aligned to the genome (translation), so all of the letters in the query sequence are capitals and colored blue. In the genomic DNA sequence below, the (translation of the) nucleotides that aligned to the protein sequence are shown in capital letters and colored blue. Refer to the legends for Figures 3 and 4 and to the text for additional information on the content of the display.