Table 1. General attributes of the L. rhamnosus strains and genome sequences used in this study.
Strain | Source of Isolation | Genome Project Accession No. | Genome Status | Average Coverage | No. of Contigs | Genome Size (Mbps)* | G+C Content (%) | No. of ORFs** | Ref. |
LC705 | Milk | PRJNA59315 | Complete | 7x | 1 | 3.03 | 46.6 | 3,033 | [20] |
ATCC 8530 | Human airways | PRJNA162169 | Complete | 30x | 1 | 2.96 | 46.8 | 2,977 | [40] |
GG | Human feces | PRJNA59313 | Complete | 11x | 1 | 3.01 | 46.7 | 2,985 | [20] |
ATCC 53103 | Human feces | PRJDA161983 | Complete | 9x | 1 | 3.01 | 46.7 | 2,905 | [39] |
ATCC 21052 | Human feces | PRJNA181588 | Draft | 149x | 123 | 2.87 | 46.7 | 3,063 | Unpub.1 |
HN001 | Dairy starter | PRJNA55109 | Draft | 36x | 94 | 2.91 | 46.6 | 2,864 | Unpub.1 |
LMS2-1 | Human gut | PRJNA55507 | Draft | 38x | 162 | 3.11 | 46.5 | 3,209 | Unpub.1 |
LRHMDP2 | Infected dental pulp | PRJNA180948 | Draft | 17x | 50 | 2.91 | 46.6 | 2,971 | [38] |
LRHMDP3 | Infected dental pulp | PRJNA180949 | Draft | 17x | 47 | 2.91 | 46.6 | 2,983 | [38] |
R0011 | Cheddar cheese | PRJNA179908 | Draft | 32x | 10 | 2.90 | 46.7 | 2,782 | [41] |
E800 | Human feces | PRJNA236793 | Draft | 20x | 83 | 3.03 | 46.6 | 3,107 | This study |
PEL5 | Human gut biopsy | PRJNA237053 | Draft | 20x | 81 | 2.99 | 46.7 | 2,922 | This study |
PEL6 | Human gut biopsy | PRJNA237054 | Draft | 20x | 71 | 2.88 | 46.7 | 2,899 | This study |
*Average genome size is 2.96 Mbps.
**Average number of ORFs is 2,977.
Unpublished.