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. 2014 Jul 17;9(7):e102762. doi: 10.1371/journal.pone.0102762

Table 1. General attributes of the L. rhamnosus strains and genome sequences used in this study.

Strain Source of Isolation Genome Project Accession No. Genome Status Average Coverage No. of Contigs Genome Size (Mbps)* G+C Content (%) No. of ORFs** Ref.
LC705 Milk PRJNA59315 Complete 7x 1 3.03 46.6 3,033 [20]
ATCC 8530 Human airways PRJNA162169 Complete 30x 1 2.96 46.8 2,977 [40]
GG Human feces PRJNA59313 Complete 11x 1 3.01 46.7 2,985 [20]
ATCC 53103 Human feces PRJDA161983 Complete 9x 1 3.01 46.7 2,905 [39]
ATCC 21052 Human feces PRJNA181588 Draft 149x 123 2.87 46.7 3,063 Unpub.1
HN001 Dairy starter PRJNA55109 Draft 36x 94 2.91 46.6 2,864 Unpub.1
LMS2-1 Human gut PRJNA55507 Draft 38x 162 3.11 46.5 3,209 Unpub.1
LRHMDP2 Infected dental pulp PRJNA180948 Draft 17x 50 2.91 46.6 2,971 [38]
LRHMDP3 Infected dental pulp PRJNA180949 Draft 17x 47 2.91 46.6 2,983 [38]
R0011 Cheddar cheese PRJNA179908 Draft 32x 10 2.90 46.7 2,782 [41]
E800 Human feces PRJNA236793 Draft 20x 83 3.03 46.6 3,107 This study
PEL5 Human gut biopsy PRJNA237053 Draft 20x 81 2.99 46.7 2,922 This study
PEL6 Human gut biopsy PRJNA237054 Draft 20x 71 2.88 46.7 2,899 This study

*Average genome size is 2.96 Mbps.

**Average number of ORFs is 2,977.

1

Unpublished.