Table 2. Locus tags for functionally relevant surface-protein loci in the L. rhamnosus pan-genome.
| Surface piliation (Locus tags) | ||||
| Strain | SpaCBA* | SpaFED** | ||
| LC705 | – | LC705_02369-02367 | ||
| ATCC 8530 | – | LRHK_2379-2376 | ||
| GG | LGG_00444-00441 | LGG_02372-02369 | ||
| ATCC 53103 | LRHM_0428-0425 | LRHM_2281-2078 | ||
| ATCC 21052 | – | HMPREF0541_00153-00150 | ||
| HN001 | – | LRH_09830-09845 | ||
| LMS2-1 | HMPREF0539_0008-0005 | HMPREF0539_2083-2086 | ||
| LRHMDP2 | – | LRHMDP2_1747-1751 | ||
| LRHMDP3 | – | LRHMDP3_2146-2142 | ||
| R0011 | – | R0011_10665-10650 | ||
| E800 | E800_215-218 | E800_224-220 | ||
| PEL5 | – | PEL5_2583-2580 | ||
| PEL6 | – | PEL6_1769-1766 | ||
| LPXTG-like surface protein (Locus tags) | ||||
| Strain | MBF ** | MabA ** | ||
| LC705 | LC705_02328 | LC705_01847 | ||
| ATCC 8530 | LRHK_2337 | LRHK_1841 | ||
| GG | LGG_02337 | LGG_01865 | ||
| ATCC 53103 | LRHM_2248 | LRHM_1797 | ||
| ATCC 21052 | HMPREF0541_03024 | HMPREF0541_02074 | ||
| HN001 | LRH_13741 | R0011_04495 | ||
| LMS2-1 | HMPREF0539_2127 | HMPREF0539_1917 | ||
| LRHMDP2 | LRHMDP2_1795 | LRHMDP2_1316 | ||
| LRHMDP3 | LRHMDP3_2005 | LRHMDP3_697 | ||
| R0011 | R0011_10445 | LRH_01177 | ||
| E800 | E800_1643 | E800_2602 | ||
| PEL5 | PEL5_2547 | PEL5_28771 | ||
| PEL6 | PEL6_1733 | PEL6_735 | ||
| Surface-associated protein (Locus tags) | ||||
| Strain | Msp1 ** | Msp2 ** | Fbp * | |
| LC705 | LC705_00310 | LC705_00025 | LC705_01467 | |
| ATCC 8530 | LRHK_318 | LRHK_28 | LRHK_1451 | |
| GG | LGG_00324 | LGG_00031 | LGG_01450 | |
| ATCC 53103 | LRHM_0311 | LRHM_0032 | LRHM_1393 | |
| ATCC 21052 | HMPREF0541_00430 | HMPREF0541_00213 | HMPREF0541_00695 | |
| HN001 | LRH_12224 | LRH_09303 | LRH_01637 | |
| LMS2-1 | HMPREF0539_2610 | HMPREF0539_0332 | HMPREF0539_1504 | |
| LRHMDP2 | LRHMDP2_732 | LRHMDP2_2303 | LRHMDP2_2187 | |
| LRHMDP3 | LRHMDP3_2058 | LRHMDP3_203 | LRHMDP3_1981 | |
| R0011 | R0011_07998 | R0011_06697 | R0011_02685 | |
| E800 | E800_1025 | E800_1407 | E800_1845 | |
| PEL5 | PEL5_2258 | PEL5_2423 | PEL5_1078 | |
| PEL6 | PEL6_1525 | PEL6_972 | PEL6_2729 | |
*Corresponding gene found in dispensable genome.
**Corresponding gene found in core genome.
1
ORF is non-concatenated sequence of two adjoining contigs.