Table 11. Comparison of level-1 conformational clusters obtained in CDR-L3, with external sets.
See notes in Table 9. In Kuroda et al. (2009), no cluster representatives are available, so the cluster member with the best resolution was arbitrarily selected in each case, in order to identify the correspondences with the results from the present study.
| This work [CDR-L3 cluster] |
Martin & Thornton, 1996
〈corresponding cluster/canonical〉 (level-3 of external median) (corresponding members) |
North, Lehmann & Dunbrack, 2011
〈corresponding cluster〉 (level-3 of external median) (corresponding members) |
Kuroda et al., 2009
〈corresponding cluster〉 (representative) (level-3 of external representative) (corresponding members) |
|---|---|---|---|
| L3-5-I | – | – | – |
| L3-7-I | 7A/4 (L3-7-I-1-2) (1/1) | L3-7-1 (L3-7-I-1-2) (2/2) |
4(1MIM) (L3-7-I-1-1) (1/1) |
| L3-8-I | 8B/- (L3-8-I-1-1) (1/1) | L3-8-1 (L3-8-I-1-1) (14/15) |
3B(1PZ5) (L3-8-I-2-1) (4/4) 6(1Q9W) (L3-8-I-1-1) (6/6) |
| L3-8-II | L3-8-cis6-1 (L3-8-II-2-1) (3/3) |
7(2FAT) (L3-8-II-2-1) (2/2) |
|
| L3-8-III | 8A/3 (L3-8-III-1-1) (1/1) | L3-8-2 (L3-8-III-2-1) (3/4) |
3A(1YQV) (L3-8-III-1-1) (2/2) |
| L3-8-IV | – | – | – |
| L3-8-V | – | – | – |
| L3-8-VI | – | – | – |
| L3-9-I | 9A/1 (L3-9-I-1-1) (40/40) | L3-9-cis7-1 (L3-9-I-1-1) (219/219) L3-9-2 (L3-9-I-9-1) (12/12) L3-9-cis7-2 (L3-9-I-15-2) (8/8) L3-9-cis7-3 (L3-9-I-12-4) (2/2) |
1(1MJU) (L3-9-I-1-2) (159/161) |
| L3-9-II | 9C/4λ (L3-9-II-1-8) (2/2) 9D/- (L3-9-II-1-4) (2/2) 9E/1 (L3-9-II-5-1) (1/1) |
L3-9-1 (L3-9-II-2-1) (17/22) |
1A (1A6V) (L3-9-II-1-4) (5/5) 1B (7FAB) (L3-9-II-1-8) (1/1) 1C (1Q0X) (L3-9-II-2-2) (2/2) |
| L3-9-III | 9B/2 (L3-9-III-1-1) (1/1) 9F/- (L3-9-III-7-1) (1/1) |
L3-9-cis6-1 (L3-9-III-1-1) (1/1) |
(9-)2 (2FBJ) (L3-9-III-1-1) (1/1) |
| L3-9-IV | – | – | – |
| L3-9-V | – | – | – |
| L3-9-VI | – | – | – |
| L3-10-I | – | – | – |
| L3-10-II | – | – | – |
| L3-10-III | – | L3-10-1 (L3-10-III-1-2) (2/6) | – |
| L3-10-IV | – | L3-10-cis7,8-1 (L3-10-IV-1-2) (1/1) | 5(1JGU) (L3-10-IV-1-2) (1/1) |
| L3-10-V | – | – | – |
| L3-10-VI | – | – | – |
| L3-10-VII | 10B/-(L3-10-VII-3-1) (1/1) | – | – |
| L3-10-VIII | – | – | – |
| L3-10-IX | – | – | – |
| L3-10-X | – | – | – |
| L3-10-XI | – | L3-10-cis8-1 (L3-10-XI-1-2) (1/2) | – |
| L3-10-XII | 10C/- (L3-10-XII-3-1) (1/1) 10D/- (L3-10-XII-8-1) (1/1) |
– | – |
| L3-11-I | 11A/5λ (L3-11-I-1-1) (2/2) | L3-11-1 (L3-11-I-1-2) (8/9) | (11-)2 (2FB4) (L3-11-I-1-1) (3/5) |
| L3-11-II | – | L3-11-cis7-1 (L3-11-II-1-2) (1/1) | 8(2NY1) (L3-11-II-1-2) (1/1) |
| L3-11-III | – | – | – |
| L3-11-IV | – | – | – |
| L3-11-V | 11B/- (L3-11-V-1-1) (1/1) | – | – |
| L3-11-VI | – | – | – |
| L3-11-VII | – | – | – |
| L3-11-VIII | – | – | – |
| L3-11-IX | – | – | – |
| L3-12-I | – | – | – |
| L3-12-II | – | L3-12-1 (L3-12-II-1-1) (1/1) | – |
| L3-12-III | – | – | – |
| L3-12-IV | – | – | – |
| L3-13-I | – | L3-13-1 (L3-13-I-1-1) (1/3) | – |
| L3-13-II | – | – | – |
| L3-13-III | – | – | – |
| Outliers | |||
| L3-10-O | 10A/5 (L3-10-O-6-1) (1/1) | – | – |