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. 2014 Jul 1;2:e455. doi: 10.7717/peerj.455

Table 1. DCP terms and definitions.

A list of terms that were used for the formulation of the DCP method and their definitions.

Interaction Frame (IF) A list of Fv positions that are found in the neighbourhood of the
examined CDR, its residues included
IF sequence A sequence of residues derived from an antibody’s Fv that
correspond to the positions included in the IF
Query IF sequence set A group of non-redundant IF sequences from all members of
the cluster that is being profiled
Target IF sequence set A group of non-redundant IF sequences from the members of all
clusters in the examined length, excluding the cluster that is being profiled
IF fragment A singlet or a non-necessarily consecutive combination of IF positions
(couplet/triplet/quadruplet/etc.)
IF fragment sequence The corresponding sequence of residues in an IF fragment
Query/Target
fragment sequence
IF fragment sequences from the Query/Target IF sequence
sets form Query/Target fragment sequences, respectively
Signature signal An IF fragment that presents disjoint IF fragment sequences
between Query and Target sets
DCP signature The complete set of signature signals that are consequently
used for the prediction of a given cluster