Table 1. DCP terms and definitions.
Interaction Frame (IF) | A list of Fv positions that are found in the neighbourhood of the examined CDR, its residues included |
IF sequence | A sequence of residues derived from an antibody’s Fv that correspond to the positions included in the IF |
Query IF sequence set | A group of non-redundant IF sequences from all members of the cluster that is being profiled |
Target IF sequence set | A group of non-redundant IF sequences from the members of all clusters in the examined length, excluding the cluster that is being profiled |
IF fragment | A singlet or a non-necessarily consecutive combination of IF positions (couplet/triplet/quadruplet/etc.) |
IF fragment sequence | The corresponding sequence of residues in an IF fragment |
Query/Target fragment sequence |
IF fragment sequences from the Query/Target IF sequence sets form Query/Target fragment sequences, respectively |
Signature signal | An IF fragment that presents disjoint IF fragment sequences between Query and Target sets |
DCP signature | The complete set of signature signals that are consequently used for the prediction of a given cluster |