. 2012 Oct 5;27(4):430–442. doi: 10.1264/jsme2.ME12029

Table 2.

Proteins up- or down-regulated in exponential phase

No.^a	Accession No.	Gene	Protein Name	MW kDa	PI	Pep.Hits	Protein Score	Fold Change^b
Carbohydrate Metabolism
EU9	gi\|163732692		alcohol dehydrogenase, zinc-containing, putative	35.40	5.05	13	804	−2.33
EU16	gi\|163732764	acsA	acetyl-coenzyme A synthetase	69.53	5.37	25	682	1.58
EU21	gi\|163732974	tme	malic enzyme	80.96	5.58	26	469	L
ED17	gi\|163731504	eda	KHG/KDPG aldolase	21.62	4.55	6	131	−5
ED34	gi\|163731505	frk	fructokinase	32.66	4.62	8	540	−6.66
ED43	gi\|163734895	tpiA	triosephosphate isomerase	28.06	4.86	14	360	−4.55
ED60	gi\|163731508	glgC	glucose-1-phosphate adenylyltransferase	47.01	5.46	30	983	−2.44
ED63	gi\|163734455	coxG	carbon monoxide dehydrogenase G protein, putative	15.85	5.50	12	549	−1.53
ED79	gi\|163732070	mvaB	hydroxymethylglutaryl-CoA lyase	30.53	4.96	16	644	−33.3
ED61	gi\|163735981		UDP-glucose/GDP-mannose dehydrogenase, putative	48.88	5.44	7	169	−5.88
ED36	gi\|163732615		PfkB family kinase, putative	35.03	4.66	15	531	−3.45
Photosynthesis and Oxidative Phosphorylation
ED54	gi\|163736059	cobT	nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase	20.54	4.59	3	216	−2.44
ED72	gi\|110677947	petA	ubiquinol-cytochrome c reductase, iron-sulfur subunit	20.10	4.55	8	529	−1.89
Fatty acid Metabolism
ED28	gi\|163731533	accB	acetyl-CoA carboxylase, biotin carboxyl carrier protein, putative	16.94	4.70	4	124	−7.15
Amino acid Metabolism
EU10	gi\|163734687	hisD	histidinol dehydrogenase	51.40	5.46	14	411	2.20
ED39	gi\|163732719	hisD	histidinol dehydrogenase	45.93	4.78	17	604	−2.08
EU18	gi\|163732684	ald	alanine dehydrogenase	38.74	5.71	19	722	2.23
ED16	gi\|163732180	hisA	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methyli deneamino] imidazole-4-carboxamide isomerase	24.80	4.55	14	822	−2.63
ED35	gi\|163735980	fmdA	formamidase, putative	33.38	4.76	6	168	−3.45
ED32	gi\|163731988	trpC	indole-3-glycerol phosphate synthase	29.42	4.71	17	503	−2.22
ED41	gi\|163733282	leuB	3-isopropylmalate dehydrogenase	39.96	4.63	10	263	−2.78
ED42	gi\|163733060	arcB	ornithine cyclodeaminase, putative	33.21	4.84	17	782	−5
ED45	gi\|163734587	aspB	aspartate aminotransferase	43.35	4.86	17	494	−3.03
ED76	gi\|163731559	aspB	aspartate aminotransferase, putative	39.31	4.67	16	773	−1.72
ED50	gi\|163733195	serB	phosphoserine phosphatase, putative	30.72	4.90	7	128	−2.04
ED51	gi\|163731381	mmsA	methylmalonate-semialdehyde dehydrogenase	53.98	5.15	24	684	−2.22
ED56	gi\|163735924	paaK	phenylacetate-CoA ligase, putative	44.68	5.29	13	349	−2.04
ED65	gi\|163731568	ilvH	acetolactate synthase 3 small subunit	20.13	5.77	8	277	−2.78
ED67	gi\|163733251	serA	D-3-phosphoglycerate dehydrogenase	56.27	5.67	11	268	−2.63
ED68	gi\|163733251	serA	D-3-phosphoglycerate dehydrogenase	56.27	5.67	23	834	−2.86
ED85	gi\|163733589	ipuC	gamma-glutamylisopropylamide synthetase, putative	51.04	5.28	20	346	−1.92
ED89	gi\|163731868	aroG	phospho-2-dehydro-3-deoxyheptonate aldolase	51.19	5.82	27	1,080	−1.82
ED90	gi\|163733560	thrC	threonine synthase	50.56	5.84	22	852	−2.38
ED93	gi\|163731356	cysE	serine acetyltransferase	29.35	6.10	22	965	−1.96
Purine/Pyrimidine Metabolism
ED48	gi\|163734274		polyribonucleotide nucleotidyltransferase	76.75	4.88	30	1,090	−2.33
ED77	gi\|163732267		thioredoxin-disulfide reductase	35.16	4.90	8	174	−1.75
ED91	gi\|163731781	guaB	inosine-5′-monophosphate dehydrogenase	50.75	5.83	24	736	−1.85
ED69	gi\|163731781	guaB	inosine-5′-monophosphate dehydrogenase	50.75	5.83	26	984	−2.08
Transcription and Translation
EU4	gi\|163734097	npdA	NAD-dependent deacetylase	26.53	5.04	7	367	2.07
EU5	gi\|163732886	tufA	elongation factor Tu	42.84	4.90	19	802	5.41
EU7	gi\|110679879	rpsB	30S ribosomal protein S2	28.19	5.02	10	448	2.05
EU19	gi\|163733470	proS	prolyl-tRNA synthetase	51.03	5.71	27	696	L
ED44	gi\|163734600		endonuclease, putative	39.54	4.76	18	898	−2.13
ED81	gi\|163735131	rnd	ribonuclease D	43.88	5.39	16	298	−1.79
ED86	gi\|163735041	thrS	threonyl-tRNA synthetase	73.82	5.53	35	977	−1.92
ED87	gi\|163732970	rph	ribonuclease PH	25.55	5.55	9	514	−5.26
ED96	gi\|163735421	ppsR	transcriptional regulator PpsR	51.50	5.68	27	850	D
Transporters
ED2	gi\|163735254		amino-acid ABC transporter, periplasmic binding protein	30.06	4.37	11	355	−3.13
ED4	gi\|163735254		amino-acid ABC transporter, periplasmic binding protein	30.06	4.37	16	558	−3.12
ED22	gi\|163731684		branched-chain amino acid ABC transporter, amino acid-binding protein	42.35	4.55	16	715	−2
ED3	gi\|163735168		putative extracellular solute-binding protein	29.86	4.48	8	365	−2.5
ED25	gi\|163733639		bacterial extracellular solute-binding protein, family 5	57.44	4.56	19	752	−3.23
ED7	gi\|163735575		ferric iron ABC transporter, periplasmic ferric iron-binding protein	36.51	4.31	8	356	−2.00
ED9	gi\|163731673		ABC transporter, binding protein	39.77	4.40	11	644	−2.28
ED11	gi\|163731860	pstS	phosphate ABC transporter, periplasmic phosphate-binding protein	35.56	4.19	9	801	−2.78
ED12	gi\|163733174	potF	putrescine ABC transporter, periplasmic putrescine-binding protein	39.57	4.30	8	362	−3.45
ED20	gi\|163735933		C4-dicarboxylate binding protein, putative	37.17	4.65	15	680	−4.76
ED21	gi\|163735933		C4-dicarboxylate binding protein, putative	37.17	4.65	16	660	−2.44
ED23	gi\|163735737		TRAP dicarboxylate transporter, DctP subunit, putative	36.53	4.57	8	141	−5
ED38	gi\|163734761		sugar ABC transporter, periplasmic binding protein, putative	47.91	4.72	17	885	−2.22
ED82	gi\|163735383		spermidine/putrescine ABC transporter, ATP-binding protein	40.37	5.30	14	175	−33.3
Stress Proteins
EU8	gi\|163735915	clpB	ATP-dependent Clp protease, ATP-binding subunit ClpB	95.34	5.03	43	937	2.49
EU15	gi\|163731525	clpP	Clp protease, putative	23.06	5.27	10	343	2.00
EU11	gi\|163734797	htpG	heat shock protein 90	73.10	5.26	11	76	L
EU17	gi\|163732530		heat shock protein, Hsp20 family	17.52	5.66	15	580	2.14
EU13	gi\|163732530		heat shock protein, Hsp20 family	17.52	5.66	10	299	L
EU23	gi\|163734278		antioxidant, AhpC/Tsa family, putative	23.58	4.95	11	209	50
ED24	gi\|163733305		serine protease DO-like precursor, putative	51.46	4.50	25	749	−4.17
ED84	gi\|163735794	pepA	leucyl aminopeptidase	51.59	5.33	21	1,090	−1.79
Chemotaxis
EU24	gi\|110680249	cheY	chemotaxis protein CheY, putative	13.11	5.07	9	351	L
Others
ED71	gi\|163732956		protein-export protein SecB, putative	18.92	4.70	11	436	−2.16
ED37	gi\|163732221	dacC	D-alanyl-D-alanine carboxypeptidase	41.66	4.71	17	685	−2.33
EU1	gi\|163734456		arylsulfatase	58.27	4.73	11	184	2.95
EU6	gi\|163734456		arylsulfatase	58.27	4.73	20	936	2.01
EU2	gi\|163735358		sulfatase, putative	60.10	4.78	21	720	2.38
EU20	gi\|163734500	pta	phosphate acetyltransferase	82.30	5.55	29	554	3.42
EU22	gi\|115345666		bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein	64.39	5.67	23	691	2.48
ED1	gi\|163731557		outer membrane protein, putative	27.77	4.44	14	803	−2.33
ED5	gi\|163732591		VacJ-like lipoprotein, putative	26.01	4.44	16	679	−3.45
ED8	gi\|163732359	ggt	gamma-glutamyltranspeptidase	61.18	4.52	8	202	−8.33
ED14	gi\|163735712		YceI-like family protein	20.76	4.58	7	305	−3.23
ED26	gi\|115345661		TPR repeat-containing protein	88.21	4.37	14	300	−2.13
ED30	gi\|163733017	cysQ	3′(2′),5′-bisphosphate nucleotidase	28.71	4.62	17	850	−2.13
ED49	gi\|163734774		monooxygenase protein, putative	67.94	4.95	21	508	−3.57
ED52	gi\|163732119		metallopeptidase, family M24, putative	64.79	5.12	22	454	−5.56
ED53	gi\|163731615		putative acetyltransferase	24.09	5.33	11	179	−2.33
ED57	gi\|163731748	acy	penicillin acylase, putative	91.03	5.13	18	459	−2.27
ED58	gi\|163734508		AMP-binding domain protein	58.70	5.23	19	702	−2.13
ED62	gi\|163733176		putative aminotransferase	50.48	5.46	9	121	−2.38
ED66	gi\|163733218		zinc-binding dehydrogenase	36.77	5.59	13	383	−2.00
ED75	gi\|163732812		immunogenic protein, putative	34.13	4.87	13	515	−2.86
ED83	gi\|163735942		amidohydrolase family protein	41.94	5.27	18	528	−4.17
ED88	gi\|163735799	pdxA	4-hydroxythreonine-4-phosphate dehydrogenase	34.31	5.77	8	285	−2.84
ED92	gi\|163732023		oxidoreductase, putative	22.12	5.93	10	356	−2.07
ED94	gi\|163735137		metallo-beta-lactamase family protein, putative	33.56	6.06	9	252	−3.13
Hypothetical Proteins
EU25	gi\|163735582		unkown protein RLO149_07769	17.02	5.16	4	117	7.93
ED13	gi\|163735835		unkown protein RLO149_00770	43.35	4.27	10	369	−2.44
ED19	gi\|163731610		unkown protein RLO149_19939	21.62	4.59	8	313	−4.76
ED31	gi\|163732009		unkown protein RLO149_01122	33.60	4.69	12	336	−2.70
ED33	gi\|163732240		unkown protein RLO149_02277	36.23	5.59	13	316	−3.45
ED46	gi\|163734706		unkown protein RLO149_14803	45.06	4.85	11	198	−3.33
ED55	gi\|163731979		unkown protein RLO149_00972	42.28	5.46	11	316	−2.33
ED59	gi\|163732720		unkown protein RLO149_12800	18.17	5.37	17	592	−2.56
ED74	gi\|163732284		unkown protein RLO149_02497	31.69	4.88	11	251	−1.89
ED80	gi\|163735585		unkown protein RLO149_07784	34.70	5.20	11	426	−33.3
ED95	gi\|163732428		unkown protein RLO149_03217	28.68	4.86	13	500	−1.72

EU, up-regulated in light regimen in exponential phase; ED, down-regulated in light regimen in exponential phase

L, only expressed under light regimen conditions; D, only expressed under dark conditions