. 2012 Oct 5;27(4):430–442. doi: 10.1264/jsme2.ME12029

Table 3.

Proteins up- or down-regulated in stationary phase

No.^a	Accession No.	Gene	Protein Name	MWkDa	PI	Pep. Hits	Protein Score	Fold Change^b
Carbohydrate Metabolism
SU10	gi\|163731361	pgk	phosphoglycerate kinase	41.43	5.09	15	466	2.34
SU11	gi\|163734512	phaA	acetyl-CoA acetyltransferase	43.23	5.05	15	477	4.60
SU12	gi\|115345672	xanB	mannose-1-phosphate guanylyltransferase	50.85	5.20	19	954	5.24
SU21	gi\|163734174	IpdA	dihydrolipoamide dehydrogenase	49.37	6.15	14	357	2.33
SD8	gi\|115345653	rfbA	glucose-1-phosphate thymidylyltransferase	31.67	4.90	4	99	D
SD13	gi\|163735839	nagZ	beta-hexosaminidase, putative	36.13	5.19	21	917	−11.11
SD14	gi\|163733474		malate/L-lactate dehydrogenase, putative	37.29	6.08	3	223	−7.69
SD24	gi\|163731409	tpiA	triosephosphate isomerase	25.60	4.92	7	359	D
SD27	gi\|163734747	fucU	fucose operon FucU protein, putative	16.28	4.86	13	1,010	−3.85
SD33	gi\|163731776	pgl	6-phosphogluconolactonase	23.75	5.06	8	503	−2.08
SD38	gi\|163733019	gtaB	UTP--glucose-1-phosphate uridylyltransferase	33.21	5.22	18	525	−4.17
SD42	gi\|163733025	kdsD	arabinose 5-phosphate isomerase	33.94	5.74	11	533	−2.63
Photosynthesis and Oxidative Phosphorylation
SU13	gi\|163732297	atpA	F0F1 ATP synthase subunit alpha	54.68	5.26	23	633	4.03
SD22	gi\|163732324		electron transfer flavoprotein-ubiquinone oxidoreductase, putative	60.01	5.59	26	1,120	D
SD29	gi\|163734669	cobH	precorrin-8X methylmutase	22.45	5.08	5	254	−3.70
Fatty acid Metabolism
SD16	gi\|163731882	lpxD	UDP-3-O-3-hydroxymyristoyl glucosamine N-acyltransferase	38.27	5.52	19	727	−6.67
SD2	gi\|163734510	fadJ	fatty acid oxidation complex alpha subunit, putative	78.48	5.61	32	815	−2.21
SD40	gi\|163734510	fadJ	fatty acid oxidation complex alpha subunit, putative	78.48	5.61	33	1,080	−2.33
Amino acid Metabolism
SU2	gi\|163731868	aroG	phospho-2-dehydro-3-deoxyheptonate aldolase	51.19	5.82	16	464	L
SU19	gi\|163733991	gill	glutamate dehydrogenase	51.48	5.91	26	569	2.64
SU20	gi\|163733991	gill	glutamate dehydrogenase	51.48	5.91	15	445	6.09
SU22	gi\|163732180	hisA	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methyli deneamino] imidazole-4-carboxamide isomerase	24.80	4.55	6	157	L
SD6	gi\|163734513	gst	glutathione S-transferase, putative	23.79	5.14	16	659	−25
SD20	gi\|110678669	fahd	fumarylacetoacetate hydrolase, putative	24.61	5.66	5	115	−8.33
SD21	gi\|163734433	ilvE	branched-chain amino acid aminotransferase	33.73	5.84	18	816	−2.08
SD30	gi\|163732015	alr	alanine racemase	36.75	4.99	17	1,040	−2.00
SD34	gi\|163732077	ivd	isovaleryl-CoA dehydrogenase	41.89	5.09	16	471	−2.56
SD35	gi\|163731381	mmsA	methylmalonate-semialdehyde dehydrogenase	53.98	5.15	19	1,020	−3.03
SD39	gi\|163734103	argF	ornithine carbamoyltransferase	34.26	5.41	15	747	−2.44
Purine/Pyrimidine Metabolism
SU17	gi\|163735199	hydA	dihydropyrimidinase	53.12	5.51	20	391	9.68
Transcription and Translation
SU1	gi\|163732886	tufA	elongation factor Tu	42.84	4.90	17	1,020	L
SU9	gi\|163733850	chvI	DNA-binding response regulator ChvI, putative	26.68	4.96	17	897	2.05
SD18	gi\|163733026		3′-5′ exonuclease family protein, putative	22.98	5.70	13	669	−50
SD32	gi\|163732327	greA	transcription elongation factor GreA	17.14	5.03	5	133	−2.18
Transporters
SU5	gi\|163731673		ABC transporter, binding protein	39.77	4.40	15	769	2.64
SU6	gi\|163732488		ABC transporter, ATP-binding protein	21.94	4.65	10	528	2.57
SD4	gi\|163735372		sugar ABC transporter, substrate-binding protein, putative	36.49	4.48	9	674	D
SD10	gi\|163733177		polyamine ABC transporter, ATP-binding protein, putative	41.39	5.08	20	694	−12.5
Stress Proteins
SD11	gi\|163734560	phoH	phosphate starvation inducible protein, putative	36.90	5.09	14	396	−10.72
Others
SU4	gi\|163731557		outer membrane protein, putative	27.77	4.44	14	524	7.33
SU14	gi\|163731748	acy	penicillin acylase, putative	91.03	5.13	23	604	9.58
SU15	gi\|163733001	ubiG	3-demethylubiquinone-9 3-methyltransferase	27.74	5.41	11	387	1.05
SU18	gi\|163732359	ggt	gamma-glutamyltranspeptidase	61.18	4.52	10	739	2.30
SD3	gi\|163735850		phospholipase/carboxylesterase family protein	23.59	4.38	5	153	D
SD7	gi\|163736040		oxidoreductase, putative	29.79	5.07	15	683	−33.3
SD9	gi\|163734732		oxidoreductase, putative	40.46	5.28	25	914	−33.3
SD12	gi\|163732119		metallopeptidase, family M24, putative	64.79	5.12	21	494	−5.88
SD17	gi\|163733176		putative aminotransferase	50.48	5.46	10	329	−11.11
SD19	gi\|163735045		hydrolase, putative	26.05	5.73	11	394	−20
SD26	gi\|163731362		peptidyl-prolyl cis-trans isomerase, cyclophilin-type, putative	18.17	4.74	7	566	−2.08
SD28	gi\|163734126		NifU-like domain protein	20.21	4.92	7	356	−2.22
SD36	gi\|163734683		decarboxylase, putative	18.74	5.16	4	237	−2.33
SD43	gi\|163732693	qor	quinone oxidoreductase	34.36	5.88	10	534	−2.33
Unkown Proteins
SU3	gi\|163732454		unkown protein RLO149_03347	19.88	4.66	10	732	3.02
SU7	gi\|163731750		unkown protein RLO149_20639	22.84	6.29	3	193	2.54
SU8	gi\|163734708		unkown protein RLO149_14813	27.79	4.85	5	99	4.12
SD15	gi\|163732606		unkown protein RLO149_12230	21.07	5.27	11	382	−7.69
SD25	gi\|163731436		unkown protein RLO149_19069	32.66	4.45	11	652	−3.45
SD37	gi\|163734540		unkown protein RLO149_13973	35.81	5.54	6	179	−2.63
SD41	gi\|163735269		unkown protein RLO149_06937	25.45	5.66	23	983	−2.27

SU, up-regulated in light regimen in stationary phase; SD, down-regulated in light regimen in stationary phase

L, only expressed under light regimen conditions; D, only expressed under dark conditions