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. 2014 Apr 1;30(15):2114–2120. doi: 10.1093/bioinformatics/btu170

Fig. 2.

Fig. 2.

Putative sequence alignments as tested in palindrome mode. The alignment process begins with the adapters completely overlapping the reads (A) testing for immediate ‘read-through’, then proceeds by checking for later overlap (B), including partial adapter read-through (C), finishing when the overlap indicates no read-through into the adapters (D)