Table 3. Cancer Data Sets and numbers of active pathways Identified by BPA and SPIA analyses.
| GEO# (GSE) | Cancer Type | Chip Type (HG-U133) | # of Samples | BPA | SPIA |
| 7476 | bladder | Plus2 | 12 (9C, 3N) | 57 | 40 |
| 12907 | brain | A | 25 (21C, 4N) | 81 | 23 |
| 15824 | brain | Plus2 | 35 (30C, 5N) | 46 | 32 |
| 8977 | breast | Plus2 | 22 (7C, 15N) | 16 | 25 |
| 22544 | breast | Plus2 | 18 (14C, 4N) | 66 | 36 |
| 41328 | colon | Plus2 | 20 (10C, 10N) | 36 | 39 |
| 14520 | liver | A2 | 43 (22C, 21N) | 77 | 22 |
| 14323 | liver | A2 | 66 (47C, 19N) | 59 | 17 |
| 10799 | lung | Plus2 | 19 (16C, 3N) | 58 | 43 |
| 14407 | ovarian | Plus2 | 24 (12C, 12N) | 5 | 18 |
| 3678 | thyroid | Plus2 | 14 (7C, 7N) | 4 | 27 |
| 6004 | thyroid | Plus2 | 18 (14C, 4N) | 10 | 27 |