Table 3.
List of Y-Polymorphisms Identified in This Study.
| SNP | Y-Positiona | Mutation | ChrXb | Haplogroupc | CERs | dbSNP Build 137 |
|---|---|---|---|---|---|---|
| V290 | 7091768 | A to T | A | A3b-M114 | 1 | — |
| V335 | 7163481 | C to T | C | E1b1a1-M2 | 3 | rs9785813 |
| V336 | 7163514 | A to T | A | A3a-M28 | — | |
| V337 | 7163703 | Del TAG | Ins | E1b1c-M329 | — | |
| V301 | 7169816 | C to T | C | A2-M6 | 6 | — |
| V302 | 7169899 | C to T | C | DE | — | |
| V318.1 | 7170441 | A to C | C | E1b1a1g1a*-M290* | — | |
| V318.2 | 7170441 | A to C | C | E2b*-M98* | — | |
| V327 | 7171673 | Ins AC | del | E1b1b1a*-V68* | 7 | — |
| V328 | 7171834 | G to T | G | J1d-P56 | — | |
| V329 | 7171957 | G to A | G | H1-M52 | rs35147341 | |
| V330 | 7172251 | C to G | C | B2b4b-M211 | — | |
| V331 | 7172768 | G to A | G | B1*-M236* | — | |
| V332.1 | 7173143 | G to A | A | E1b1a1a-M58 | rs9786714 | |
| V332.2 | 7173143 | G to A | A | F2-IJ-K | rs9786714 | |
| V283 | 7209376 | G to A | G | E1b1a1*-M2* | 8 | — |
| V284 | 7209401 | G to T | G | E1a*-M33* | — | |
| V334 | 7209078 | C to G | C | O2b-P49 | — | |
| V297 | 7234782 | C to T | C | J2-M172 | 9 | — |
| V299 | 7235118 | C to A | C | B2b*-M112* | — | |
| V300 | 7235379 | G to A | G | A3b-M144 | rs35195174 | |
| V319 | 7239870 | C to T | (C/T) rs145173948 | B2a1*-M218* | 10 | — |
| V320 | 7240836 | A to C | A | O-M175 | — | |
| V339 | 7246397 | A to G | A | A1b-V148 | 11 | — |
| V279 | 7319200 | T to C | T | E1b1b1b1-M34 | 12 | — |
| V280 | 7319490 | C to T | C | A3b-M144 | — | |
| V281 | 7319576 | A to C | A | A2-V218 | — | |
| V282 | 7319580 | T to C | T | E1b1b1-M35 | — | |
| V340 | 7333516 | A to G | A | R1b1a*-V88* | 13 | — |
| V291 | 7333543 | C to T | C | J2b-M12 | — | |
| V292 | 7334323 | T to C | T | O1a2-M50 | — | |
| V293 | 7418611 | G to A | (C/G) rs187021908 | F*-M89* | 14 | — |
| V294 | 7419117 | C to T | C | B2b3-M30 | — | |
| V295 | 7419266 | G to A | G | A3a-M28 | — | |
| V296 | 7419349 | G to C | G | A2-M6 | — | |
| V321 | 14051677 | C to T | C | A2-M114 | 15 | — |
| V322 | 14051686 | A to G | G | E*-M96* | — | |
| V323 | 14051820 | C to T | C | A3a-M28 | — | |
| V324 | 14051832 | C to A | C | E1b1b1a1d-V65 | — | |
| V325 | 14051863 | C to T | T | B2b4b-M211 | — | |
| V326 | 14051913 | G to A | G | A3b1b-V11 | — | |
| V285 | 14295658 | C to T | C | O-M175 | 16 | — |
| V286 | 14295751 | C to G | C | C1-M8 | — | |
| V287 | 14295977 | G to A | G | D2a1-M125 | — | |
| V288 | 14296291 | G to A | NA | A3a-M28 | — | |
| V289 | 14296306 | T to G | NA | B2a1a2a2a*-P50* | — | |
| V270 | 14482977 | G to C | G | A3-M32 | 17 | rs34555243 |
| V271 | 14483622 | T to C | C | C3c-M48 | — | |
| V272 | 14483887 | A to C | A | B2b4b-M211 | — | |
| V333 | 14483992 | G to C | G | O1a2-M50 | — | |
| V273 | 14484106 | G to T | G | B1*-M236* | — | |
| V274 | 14484379 | A to C | C | I-M170 | 18 | rs113822196 |
| V275 | 14484394 | C to T | T | I*-M170* | rs113686211 | |
| V257 | 14484596 | C to T | C | E1b1b1b-V257 | — | |
| V276 | 14484897 | G to A | G | A2-T | — | |
| V277 | 14490108 | G to A | G | D2a1-M125 | 19 | — |
aPosition according to the February 2009 Y-chromosome reference sequence of the UCSC genome browser.
bGametologous base on the X chromosome. NA, no X–Y alignment. The two X-SNPs have a MAF < 1%.
cHaplogroup nomenclature by lineage and last mutation. Nomenclature according to Karafet et al. (2008) and Scozzari et al. (2012).