Table 4. IL12RB1 polymorphisms that result in amino acid changes*.
SNPid | Nucleotide change | Amino acid change | Population frequency a (number of chromosomes tested) |
---|---|---|---|
rs11575925 | 222C>G | S74R | 0.4 % North America (4550) |
0.1 % European descent (1285) | |||
| |||
rs147215816 | 271G>A | A91T | n.a.b |
| |||
rs11575926 | 467G>A | R156H | 15 % European descent (1285) |
11.3 % North Americans (4550) | |||
0 % Asian, various (345) | |||
0 % Sub-Sahara African (238) | |||
| |||
rs11575934 | 641A>G | Q214R | 37.5 % Asian, various (354) |
28.5 % European descent (1305) | |||
10.8 % Sub-Sahara African (120) | |||
| |||
rs375947 | 1094T>C | M365T | 38.3 % Asian, various (180) |
28.7 % European descent (569) | |||
25.7 % Sub-Sahara African (226) | |||
14 % Mexican ancestry (100) | |||
| |||
rs401502 | 1132G>C | G378R | 38.2 % Asian, various (296) |
35 % Europeans (286) | |||
18.6 % Sub-Sahara African (118) | |||
| |||
ss539004547 | 1312C>T | H438Y | 0.9 % Japanese (112)c |
| |||
rs11575935 | 1573G>A | A525T | 1.7 % Asian, various (120) |
0.4 % European descent (2040) | |||
| |||
ss539004548 | 1781G>A | G594E | 0.9 % Japanese (112)c |
only polymorphisms included that have been analyzed in a retroviral expression model and were found not to have an effect on IL-12Rβ1 function [van de Vosse et al., 2005].
data from the SNP database [NCBI SNP database, 2012],
identified in a Chinese MSMD patient,
data from [Sakai et al., 2001].
Note: Two SNPs are still without rs-number, these have been requested (24-9-2012).