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. Author manuscript; available in PMC: 2015 Jul 1.
Published in final edited form as: J Virol Methods. 2014 Mar 26;203:73–80. doi: 10.1016/j.jviromet.2014.03.008

Table 3.

Comparison of diversity by Jukes–Cantor, K80, and TN93 models of single-genome sequences (SGS) calculated using MEGA5 and PAPNC.a

SGS samples MEGA5 PAPNC
JC K80 TN93 JC K80 TN93
1 0.0044 0.0044 0.0044 0.0044 0.0044 0.0044
2 0.0114 0.0114 0.0011 0.0108 0.0108 0.0108
3 0.0066 0.0066 0.0066 0.0057 0.0057 0.0057
4 0.0206 0.0207 0.0208 0.0185 0.0185 0.0187
5 0.0113 0.0113 0.0114 0.0112 0.0112 0.0112
6 0.0015 0.0015 0.0015 0.0015 0.0015 0.0015
7 0.0115 0.0115 0.0116 0.0095 0.0095 0.0095
8 0.0041 0.0041 0.0041 0.0038 0.0038 0.0044
9 0.0121 0.0121 0.0122 0.0121 0.0121 0.0121
a

Same SGS sequence data calculated with both MEGA5 and PAPNC.