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. 2013 Mar 28;1(4):apps.1200386. doi: 10.3732/apps.1200386

Table 1.

Characterization of 15 microsatellite markers developed in the genus Tilia.

Locus Primer sequences (5′–3′) Repeat motif Size (bp)a Primer conc. (mM) Fluorescent dyeb Multiplex sets GenBank accession no.
Tc4 F: ATTTTAGAATGCCAACCTGCTAAG T6(GT)12 224 0.2 HEX B JQ289157
R: TATTGAAGTCCATTTCCAATTGTC
Tc5 F: TTTTCATACATTTAGAGACTTTTAGCA (AG)12 150 0.2 FAM D JQ289158
R: TGCATGATTTGTATGTTTAGGG
Tc6 F: CCATATCTTCTGCCAGTTTTCC (AG)12 143 0.2 HEX A JQ289159
R: GGACTAATTTCTTCCTTTTATTAGGC
Tc7 F: TTTACTTTTGCCAGTTGTGAGG (GA)13 234 0.1 FAM D JQ289160
R: CACCTAGAATGCCTCCTATTCG
Tc8 F: CGAAGAAACTGTCAAAACAACG (GA)13 160 0.1 HEX B JQ289161
R: AGCTGGGTTTTAGAGGATAGGG
Tc11 F: AGCTATGAAAGAACTATCAAGAGAAAG (AG)13 146 0.1 NED C JQ289162
R: CCCCAAGACATTGCAGTAGAAC
Tc31 F: TTTGCAAAGACTACTCCAAGAATC (GA)12 205 0.2 FAM B JQ289164
R: AAATCGATGGTCAAGAACTAAATC
Tc915 F: ACATCGATTGTATTTCCCTTTAAC (CT)16 165 0.2 HEX C JQ289165
R: GTTGTATTTTGCCCTTAACATTG
Tc918 F: AACGGCTAATTACTCCTAGTTTCG (AC)9(TC)2 240 0.2 HEX A JQ289166
R: TGTTCAGCTCACTACTACCTTTCAC
Tc920 F: AAATGTCTTCAGAGTGACTAGATGG (GA)2(GT)15(AG)4 232 0.1 FAM A JQ289167
R: TGCCTCATTATTCTCCTAATTCTC
Tc927 F: AGTCCTCCTGTCAAATGCTG (AG)10 157 0.1 FAM C JQ289168
R: ATCACACTCGTTTATGACATCTTG
Tc937 F: AGCCAACCAACTTTTACAATACAG (AG)13 162 0.1 NED A JQ289169
R: AGATAAAAGCACATAAATCGATGG
Tc943 F: ATTTCATCTTTCTCTAAAGCCTTG (CA)10 150 0.2 FAM B JQ289170
R: GGGAAAGCCTGTGTTAGTTTC
Tc951 F: TGTTATGACCTCACTTATAACCAAGT (CT)12 160 0.2 NED D JQ289171
R: GGGTGAGCTGACAATATAGAAGAG
Tc963 F: CTAACCCCATTCTCTTTAATTCTG (CT)11 238 0.2 HEX C JQ289172
R: GCTTTCATTTCAGTTTTCCTCTAC
a

Size of the original fragment.

b

Fluorescent label on the forward primer.