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. 2014 Apr 29;5(5):601–610. doi: 10.4161/viru.29002

Table 5. Primer sequences of amplified genes, PCR conditions used and product size of each amplicon.

Gene Primers 5′…….3′ Amplification conditions Product size (bp) References
Temp Time No. of cycles
InvA 139: GTGAAATTAT CGCCACGTTC GGGCAA
141: TCATCGCACC GTCAAAGGAA CC
94 °C 5 min 1 284 22
94 °C 30 s 35
55 °C 45 s
72 °C 45 s
72 °C 10 min 1
SefA Sef167: AGGTTCAGGC AGCGGTTACT
Sef478: GGGACATTTA GCGTTTCTT
94 °C 45 s 1 312 23
94 °C 20 s 35
57 °C 15 s
72 ° 15 s
72 °C 2 min 1
16S rRNA Lwp57: AGTTTGATCC TGGCTCAG
Lwp58: AGGCCCGGGA ACGTATTCAC
94 °C 2 min 1 1381 24
94 °C 2 min 40
55 °C 2 min
72 ° 1 min
72 °C 7 min 1