Table 5. Primer sequences of amplified genes, PCR conditions used and product size of each amplicon.
Gene | Primers 5′…….3′ | Amplification conditions | Product size (bp) | References | ||
---|---|---|---|---|---|---|
Temp | Time | No. of cycles | ||||
InvA |
139: GTGAAATTAT CGCCACGTTC GGGCAA 141: TCATCGCACC GTCAAAGGAA CC |
94 °C | 5 min | 1 | 284 | 22 |
94 °C | 30 s | 35 | ||||
55 °C | 45 s | |||||
72 °C | 45 s | |||||
72 °C | 10 min | 1 | ||||
SefA |
Sef167: AGGTTCAGGC AGCGGTTACT Sef478: GGGACATTTA GCGTTTCTT |
94 °C | 45 s | 1 | 312 | 23 |
94 °C | 20 s | 35 | ||||
57 °C | 15 s | |||||
72 ° | 15 s | |||||
72 °C | 2 min | 1 | ||||
16S rRNA |
Lwp57: AGTTTGATCC TGGCTCAG Lwp58: AGGCCCGGGA ACGTATTCAC |
94 °C | 2 min | 1 | 1381 | 24 |
94 °C | 2 min | 40 | ||||
55 °C | 2 min | |||||
72 ° | 1 min | |||||
72 °C | 7 min | 1 |