Table 8.
Community composition of switchgrass-adherent microbiome at the phylum level based on 16S rRNA pyrotag data.
Percentage of sequences | ||||||||||
---|---|---|---|---|---|---|---|---|---|---|
0 h | 0.5 h | 1 h | 2 h | 4 h | 6 h | 16 h | 24 h | 48 h | 72 h | |
BACTERIA | ||||||||||
Firmicutes | 65.27 | 25.57 | 42.79 | 44.25 | 44.47 | 39.93 | 38.41 | 40.41 | 45.00 | 44.78 |
Proteobacteria | 22.75 | 25.36 | 5.91 | 3.39 | 5.52 | 5.91 | 4.26 | 2.67 | 2.41 | 2.96 |
Bacteroidetes | 7.29 | 34.09 | 32.02 | 36.84 | 28.02 | 37.00 | 35.08 | 35.37 | 32.47 | 34.54 |
Actinobacteria | 3.79 | 0.60 | 0.39 | 0.48 | 0.70 | 0.28 | 0.20 | 0.23 | 0.36 | 0.43 |
Cyanobacteria | 0.01 | 0.90 | 1.48 | 0.80 | 1.30 | 0.82 | 0.97 | 0.65 | 0.33 | 0.95 |
Spirochaetes | 0.23 | 1.80 | 2.07 | 1.66 | 1.24 | 2.72 | 4.42 | 4.61 | 3.75 | 2.21 |
Tenericutes | 0.21 | 7.46 | 6.18 | 5.10 | 10.34 | 5.78 | 4.59 | 3.47 | 3.17 | 4.61 |
Fibrobacteres | 0.14 | 0.36 | 1.35 | 2.14 | 0.63 | 2.30 | 6.86 | 7.54 | 6.23 | 2.11 |
Elusimicrobia | 0.03 | 0.40 | 0.39 | 0.23 | 0.30 | 0.25 | 0.29 | 0.26 | 0.26 | 0.27 |
Verrucomicrobia | 0.01 | 0.37 | 0.52 | 0.50 | 0.58 | 0.36 | 0.32 | 0.26 | 0.27 | 0.64 |
Lentisphaerae | 0.02 | 0.34 | 0.79 | 0.55 | 0.58 | 0.52 | 0.59 | 0.39 | 0.58 | 0.72 |
Planctomycetes | 0.01 | 0.25 | 0.54 | 0.51 | 0.50 | 0.26 | 0.29 | 0.39 | 0.62 | 0.60 |
Chloroflexi | 0.01 | 0.13 | 0.36 | 0.34 | 0.23 | 0.16 | 0.27 | 0.29 | 0.39 | 0.36 |
TM7 | 0.02 | 0.06 | 0.17 | 0.03 | 0.26 | 0.05 | 0.05 | 0.00 | 0.03 | 0.03 |
Synergistetes | 0.00 | 0.03 | 0.18 | 0.06 | 0.06 | 0.13 | 0.12 | 0.09 | 0.15 | 0.10 |
Bacteria phyla <0.1% | 0.04 | 0.04 | 0.07 | 0.04 | 0.04 | 0.01 | 0.05 | 0.05 | 0.11 | 0.10 |
Unclassified bacteria phyla | 0.15 | 1.95 | 4.11 | 2.57 | 4.28 | 3.11 | 2.72 | 3.11 | 3.56 | 3.86 |
ARCHAEA | ||||||||||
Euryarchaeota | 0.01 | 0.29 | 0.67 | 0.50 | 0.96 | 0.43 | 0.23 | 0.22 | 0.31 | 0.73 |