Table 2.
The number of reads obtained and percentages of mapped reads per sample
| Sample ID 1 | Total reads number, M 2 | Mapping rate, % 3 | CDS exons, % | 5′UTR, % | 3′UTR, % | Intron, % |
|---|---|---|---|---|---|---|
| H906 |
53.08 |
84.80 |
72.85 |
1.78 |
10.43 |
6.45 |
| H909 |
52.16 |
92.90 |
76.21 |
2.64 |
7.98 |
5.11 |
| H710 |
54.88 |
87.86 |
75.85 |
1.81 |
9.77 |
5.01 |
| H712 | 51.56 | 88.17 | 75.28 | 1.79 | 8.89 | 6.35 |
1. H710, H712 and H906, H909 are two pair full-sibs pigs. H710, H906 and H712, H909 are the BH and BL groups respectively.
2. Indicate millions of reads.
3. Use the Ensembl V68 as the reference genome annotation to classify the mapping tags into the different regions. Ratio of the tags mapping on the subregion of the gene was calculated as the tags on each region divided by the total tags on the whole genome.