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. 2014 May 5;14:119. doi: 10.1186/1471-2229-14-119

Table 3.

Quantitative Trait Loci and epistatic interactions determined by stepwiseQTL analysis

QTL Chromosome Position (cM) Interval (cM) Variation explained (%) Allele mean trichomes Candidate gene(s)
Hi-0 x Ob-0 Constitutive: Model 1; pLOD = 7.32
HOC2
 2
 48
 40-62
 6.46
 H 14.3; O 12.4
  
HOC3
 4
 33
 23-39
 8.88
 H 12.5; O 14.5
  
HOC4
 4
 82
 67-84.8
 5.61
 H 13.7; O 13.0
  
HOC5
 5
 118
 115-121
 13.31
 H 14.2; O 11.8
  
 
 TOTAL
  
  
 34.26
  
  
Hi-0 x Ob-0 Constitutive: Model 2; pLOD = 7.31
HOC1
 1
 86
 80-95
 7.07
 H 13.4; O 14.2
 -
HOC2
 2
 48
 42-67
 5.04
 H 14.3; O 12.4
 ETC2/TCL1/TCL21; TTG2; URM9
HOC3
 4
 34
 26-38
 11.27
 H12.5; O 14.5
 -
HOC4
 4
 71
 65-84.8
 11.83
 H 13.6; O 13.1
 -
HOC5
 5
 118
 115-121
 11.97
 H 14.2; O 11.8
 -
HOC1xHOC42
  
  
  
 7.07
  
  
 
  
  
 TOTAL
 54.25
  
  
Hi-0 x Ob-0 Induced; pLOD = 6.05
HOD1
 2
 52
 38-62
 5.92
 H 14.4; O 13.1
 ETC2/TCL1/TCL2;TTG2; URM91
HOD2
 3
 47
 43-58
 10.76
 H 14.4; O 13.0
 GL1
HOD3
 4
 24
 3-37
 11
 H 13.3; O 14.7
 TT8
HOD4
 4
 79.5
 77-81
 12.72
 H 14.6; O 13.1
 -
HOD5
 5
 116
 112-122
 6
 H 14.3; O 12.6
 -
HOD2xHOD32
  
  
  
 5.16
  
  
 
  
  
 TOTAL
 51.56
  
  
St-0 x Sf-2 Constitutive; pLOD = 7.32
SSC1
 1
 107
 102-109.7
 7.84
 Sf 7.7; St 6.7
 GL2; At1g776701; JAZ2
SSC2
 2
 61
 52-68
 7.15
 Sf 6.6; St 7.4
 URM9; TTG21
SSC3
 3
 72
 9-76
 6.77
 Sf 7.4; St 6.8
  
SSC4
 4
 29
 25-32
 9.88
 Sf 7.3; St 6.5
 TT8
SSC5
 5
 11
 5-13
 9.84
 Sf 6.6; St 7.2
  
 
  
  
 TOTAL
 41.48
  
  
St-0 x Sf-2 Induced; pLOD = 4.0
SSD1
 1
 102
 87.92-109
 12.34
 Sf 9.3; St 8.3
 RGL1; JAZ91; JAZ2; GL2; At1g77670
SSD2
 3
 7.8
 3-13
 6.89
 Sf 8.9; St 8.0
 -
SSD3
 5
 4
 0-108
 6.99
 Sf 8.2; St 8.8
 -
 
  
  
 TOTAL
 26.22
  
  
St-0 x Sf-2 Response; pLOD = 2.51
SSR1
 1
 64
 58-71
 11.98
 Sf 2.2; St 1.2
 -
      TOTAL 11.98    

1Denotes candidate gene in closest proximity to peak LOD score of the QTL.

2QTL x QTL interaction.