Table 3. Top Genes showing decreased methylation (<−2.0 fold) in HIV-seropositive METH users in comparison to the HIV-seropositive non-user group.
REF ACC # | Gene Name | Probeset ID | Fold change | P value | CHR |
NM_052909 | PLEKHG4B | cg18816122 | −14.14 | 0.00319 | 5 |
NM_001052 | SSTR4 | cg01471923 | −8.33 | 0.00206 | 20 |
NM_207189 | BRDT | cg01081438 | −6.47 | 0.00352 | 1 |
NM_138286 | ZNF681 | cg25958450 | −4.93 | 0.00397 | 19 |
NM_005633 | SOS1 | cg02502145 | −4.76 | 0.00038 | 2 |
NM_001163 | APBA1 | cg14460215 | −4.21 | 0.00229 | 9 |
NM_024027 | COLEC11 | cg10724632 | −4.07 | 0.00015 | 2 |
NM_002217 | ITIH3 | cg05393861 | −3.90 | 0.00085 | 3 |
NM_021729 | VPS11 | cg01385018 | −3.29 | 0.00162 | 11 |
NM_020728 | ESYT2 | cg13211008 | −3.22 | 0.00102 | 7 |
NM_001165963 | SCN1A | cg00881894 | −3.13 | 0.00048 | 2 |
NM_001101426 | ISPD | cg11973981 | −2.91 | 0.00333 | 7 |
NM_001009991 | SYTL3 | cg06426293 | −2.91 | 0.00545 | 6 |
NM_001145670 | SORBS2 | cg09120722 | −2.87 | 0.00307 | 4 |
NM_000705 | ATP4B | cg06955954 | −2.63 | 0.00025 | 13 |
NM_206918 | DEGS2 | cg20904336 | −2.52 | 0.00159 | 14 |
NM_005461 | MAFB | cg12499119 | −2.37 | 0.00018 | 20 |
NM_001098796 | TOX2 | cg26365090 | −2.31 | 0.00065 | 20 |
NR_001298 | HLA-DRB6 | cg25140213 | −2.19 | 0.00170 | 6 |
NM_020133 | AGPAT4 | cg09655876 | −2.16 | 0.00152 | 6 |
NM_001164759 | PRKAR1B | cg10117599 | −2.16 | 0.00002 | 7 |
NM_080425 | GNAS | cg23484981 | −2.16 | 0.00035 | 20 |
NM_024686 | TTLL7 | cg10977910 | −2.15 | 0.00085 | 1 |
NR_029411 | LOC100133091 | cg17404449 | −2.15 | 0.00046 | 7 |
NM_001039841 | ARHGAP11B | cg18739374 | −2.05 | 0.00113 | 15 |
NM_001143974 | ASAH2 | cg22645355 | −2.01 | 0.00085 | 10 |