Table 7. Comparison between genes with cis-regulatory relationships found by Boolean implications and alternate methods.

Data Types being Compared	Genes found by Boolean Implications	Alternate Method	Overlap with Alternate Method
{Copy Number Deletion, Expression}	1703	t test	860
{Copy Number Amplification, Expression}	74	t test	11
{DNA methylation, Expression}	198	correlation	94

Overlap between the genes found by Boolean implications and the top-ranked genes found by an alternate method in the TCGA OV data set.