Table 3. Haplotypes with experiment-wide P values <0.0001 for ΔVO260.
| Region | Location | Maximum P value | SNPs (rs) | Allele values | Gene |
|---|---|---|---|---|---|
| 2 | 22.46 | 1.0 × 10−6 | rs9552790 | 3 | |
| rs9578521 | 3 | ||||
| rs9506995 | 3 | ||||
| rs9510516 | 3 | ||||
| rs17078046 | 3 | ||||
| 2 | 22.65 | 9.8 × 10−6 | rs1415130 | 3 | |
| rs4770402 | 2 | ||||
| rs4770403 | 1 | SGCG | |||
| rs3794370 | 1 | SGCG | |||
| s512444 | 3 | SGCG | |||
| rs7322327 | 3 | SGCG | |||
| rs3794368 | 3 | SGCG | |||
| 3 | 23.41 | 5.6 × 10−7 | rs12876596 | 3 | FLJ46358 |
| rs2147995 | 1 | ||||
| rs2765114 | 1 | ||||
| rs4769296 | 1 | ||||
| rs7331024 | 1 | ||||
| 5 | 25.43 | 9.3 × 10−5 | rs3783139 | 1 | ATP8A2 |
| rs912514 | 3 | ATP8A2 | |||
| rs11616429 | 2 | ATP8A2 | |||
| rs975508 | 3 | ATP8A2 | |||
| rs975506 | 1 | ATP8A2 | |||
| 6 | 27.25 | 4.0 × 10−5 | rs1326383 | 1 | |
| rs1326384 | 3 | ||||
| rs1231051 | 2 | ||||
| rs1231054 | 1 | ||||
| rs3742112 | 3 | GSX1 | |||
| rs1231064 | 3 | ||||
| rs10162043 | 1 | ||||
| rs9554166 | 3 |
Haplotype from among alternatives with different window sizes and different start SNPs