Table 1. Correlation between FXYD3 expression and percent of methylation of individual CpGs.
All subjects | Controls | T2D patients | ||||
CpGposition | r coeff | p value | r coeff | p value | r coeff | p value |
–43 | –0,7219 | 0,0016 | –0,7143 | 0,0576 | –0,9048 | 0,0046 |
–177 | –0,7353 | 0,0012 | –0,6667 | 0,0831 | –0,9286 | 0,0022 |
–197 | –0,5588 | 0,0244 | ||||
–230 | –0,6265 | 0,0094 | ||||
–391 | –0,5412 | 0,0304 | ||||
–452 | –0,5029 | 0,0471 | ||||
–535 | –0,5971 | 0,0146 |
DNA from control (n = 8) and T2D (n = 8) human islets were extracted from the same samples as used for the real-time PCR analysis. Then, the 32 CpGs of the FXYD3 promoter from −1 to −1200 were analyzed by pyrosequencing. Correlation analysis between methylation level and FXYD3 expression measured by quantitative RT-PCR was performed for each CpG using the non-parametric Pearson test. 7 CpG sites in the proximal FXYD3 promoter showed significant correlation between methylation level and FXYD3 expression. Within these 7 CpGs, 2 sites showed strongly significant correlation between methylation and FXYD3 mRNA expression only in the T2D group.