Table 1.

Summary of genotyping outcome and diversity statistics of the Watkins collection for 41 SSR markers binding to 45 loci in the bread wheat genome and six gene-based markers. Equations for diversity indices are given in Table S1. Mean and range are given over SSR marker loci only

Marker name	chr	Missing	d AR	d RAR	$d_{\widehat{r}(g)}$	d Nei	d PIC	d SWI
barc019	3A	0.0	16	8	7.9	0.74	0.71	1.71
barc021	7A	2.7	16	6	8.4	0.58	0.57	1.46
barc029	7A	1.7	12	6	5.8	0.61	0.57	1.28
barc032	5B	0.9	16	5	9.9	0.83	0.81	2.06
barc096	6D	0.2	16	12	5.1	0.53	0.47	1.07
barc097	7BD5B	16.9	11	6	5.8	0.74	0.70	1.52
barc107	6A	0.9	14	8	6.2	0.50	0.46	1.12
barc110	5D	0.3	29	14	14.9	0.93	0.92	2.75
barc127	6B	0.4	19	12	8.2	0.83	0.81	1.97
barc134	6B	11.2	20	12	9.0	0.80	0.78	1.93
barc164	3B	0.1	29	16	13.3	0.86	0.85	2.42
barc172	7BD5B	0.0	11	3	6.8	0.77	0.74	1.67
barc240	1ABD5B	0.1	33	18	13.1	0.85	0.83	2.37
cfd079.a	3ABD	8.4	26	9	14.5	0.91	0.90	2.65
cfd079.b	3ABD	14.0	13	8	6.5	0.74	0.70	1.59
gdm111	1D	7.8	13	5	7.3	0.75	0.71	1.64
gdm129	4D	0.0	8	5	3.4	0.22	0.21	0.49
gwm003*	3D	0.0	16	9	7.2	0.69	0.66	1.56
gwm018*	1B	0.6	15	7	7.8	0.74	0.71	1.69
gwm030.a	2D3A	23.2	16	8	9.0	0.79	0.77	1.91
gwm030.b	2D3A	10.4	28	9	16.9	0.93	0.93	2.88
gwm046*	7B	1.6	28	10	15.1	0.91	0.91	2.71
gwm095*	2A	0.0	14	7	7.7	0.81	0.79	1.86
gwm155*	1D3A	0.5	24	13	10.1	0.80	0.78	2.01
gwm190*	5D	0.6	22	12	9.9	0.84	0.83	2.12
gwm213*	5B	1.5	46	19	23	0.96	0.95	3.38
gwm219*	6B	0.0	30	11	16.0	0.91	0.91	2.76
gwm291*	5A	13.0	29	12	15.0	0.87	0.86	2.56
gwm312*	2A	0.1	43	25	17.3	0.89	0.88	2.80
gwm337	1D	3.3	25	11	12.6	0.88	0.87	2.43
gwm357*	1A	0.1	11	4	6.1	0.73	0.69	1.53
gwm437*	7D	0.0	26	8	16.3	0.93	0.93	2.83
gwm456*	3D	0.1	18	7	10.1	0.84	0.82	2.10
gwm526.a	2B	3.7	7	3	4.2	0.62	0.58	1.18
gwm526.b	2B	3.5	15	6	8.5	0.77	0.74	1.80
gwm539	2D	0.4	61	34	23.5	0.96	0.96	3.45
gwm570*	6A	0.0	26	14	12.7	0.89	0.88	2.45
gwm608.a	2D4D6B	21.4	6	0	6.0	0.80	0.77	1.70
gwm608.c	2D4D6B	0.7	20	9	11.3	0.89	0.88	2.38
psp3100	1B	0.6	54	36	17.6	0.92	0.92	2.95
wmc093	1AD	1.1	9	7	2.7	0.51	0.39	0.78
wmc105	6B	4.1	40	20	18.5	0.91	0.90	2.90
wmc110	5A	22.4	3	0	2.7	0.34	0.29	0.59
wmc154	2B	0.6	38	28	11.5	0.78	0.76	2.11
wmc168	7A	12.3	34	14	15.3	0.80	0.79	2.40
mean (SSRs)		4.2	22.4	11.0	11.1	0.78	0.75	2.09
min (SSRs)		0.0	3	0	2.7	0.22	0.21	0.49
max (SSRs)		23.2	61	36	24.9	0.96	0.96	3.45

Ppd-A1	2A	3.4	3	1	1.2	0.14	0.13	0.29
Ppd-B1	2B	1.8	5	2	1.4	0.23	0.22	0.49
Ppd-D1	2D	0.0	7	2	2.0	0.61	0.56	1.16
Vrn-A1	5A	9.7	5	2	1.2	0.16	−1.25	0.4
Vrn-B1	5B	18.6	4	0	1.9	0.56	0.45	1.00
Vrn-D1	5D	18.1	4	1	1.5	0.29	0.27	0.60

Markers shared with Gediflux collection are indicated by a^* after the marker name

chr putative chromosomal locations according to Gramene database (http://www.gramene.org/markers), d _AR allele richness, d _RAR number of rare alleles, $d_{\widehat{r}(g)}$ allele richness after rarefaction, d _Nei Nei’s gene diversity, d _PIC polymorphic information content, d _SWI Shannon–Weaver Diversity Index