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. 2014 Jul 25;5:223. doi: 10.3389/fgene.2014.00223

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Copyright © 2014 Kuznetsova, Thevasagayam, Sridatta, Komissarov, Saju, Ngoh, Jiang, Shen and Orbán.

This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) or licensor are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.

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Teleost and mammalian transcriptomes show similarity to the non-coding regions of genomes as they also contain various amounts of different dispersed and tandem elements. (A) Comparative analysis of the relative proportion of repeat types in the transcriptome of four teleosts and two mammals. The repeat content of the Asian seabass transcriptome is closer to that of the Japanese medaka than those of the Nile tilapia and the three-spined stickleback. On the Y axis, the percentage of repeat transcript sequences with Repbase hits from all the transcripts are shown. (B) Phylogenetic relations between human (Homo sapiens), mouse (Mus musculus), three-spined stickleback (Gasterosteus aculeatus), medaka (Oryzias latipes), Nile tilapia (Oreochromis niloticus), European seabass (Dicentrarchus labrax), Asian seabass (Lates calcarifer) were generated by Tree of Life interactive tool (Letunic and Bork, 2011).