Table 1. Selected BridgeDb app commands.

Arguments with asterisks (*) are required.

Command	Arguments	Description
bridgedb resource add	classPath= IDMapper class path* connString= BridgeDb connection string* displayName= display name appName= name of client Cytoscape app	Add a mapping resource. appName is the name of the client Cytoscape app that is using this command.
bridgedb resource remove	connString= BridgeDb connection string* appName= name of Cytoscape app	Remove a mapping resource.
bridgedb resource select	connString= BridgeDb connection string* select= true or false appName= name of client Cytoscape app	Select or deselect an mapping resource.
bridgedb id mapping	network= Cytoscape network name* sourceColumn= source column in node table* targetColumn= source ID type* sourceIdType= target column in node table* targetIdType= target ID type* appName= name of client Cytoscape app	Map identifiers from a column in node table to another in a Cytoscape network.
bridgedb resource config dialog	appName= name of client Cytoscape app	Open the resource management/ configuration dialog.
appName= name of client Cytoscape app	bridgedb main dialog	Open the main BridgeDb app dialog.