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. 2014 Jul 25;9(7):e102690. doi: 10.1371/journal.pone.0102690

Table 1. Identification of the main differentially regulated protein spots among three treatments compared to the control.

Spot No. Protein Name Accession No. Species Score Matched Peptides Coverage
ATP binding/unfolded protein binding
1 Chaperone DnaK ABE79560 Medicago truncatula 270 12 13%
Identical protein binding/serine-type endopeptidase activity
3 subtilisin-like protease CAA71234 Solanum lycopersicum 741 41 56%
Oxidoreductase/peroxidase
4 Suberization-associated anionic peroxidase 1 P15003 Solanum lycopersicum 319 6 14%
ATP binding
5 Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic O49074 Solanum pennellii 775 16 37%
6 Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic O49074 Solanum pennellii 2098 71 58%
7 Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic O49074 Solanum pennellii 945 24 43%
8 Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic O49074 Solanum pennellii 487 9 19%
9 Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic O49074 Solanum pennellii 688 21 34%
10 Ribulose bisphosphate carboxylase/oxygenase activase, chloroplast precursor O49074 Solanum pennellii 198 6 9%
44 Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic O49074 Solanum pennellii 628 14 23%
Catalytic activity/coenzyme binding
11 mRNA binding protein precursor AAD21574 Lycopersicon esculentum 524 12 31%
L-malate dehydrogenase activity/binding
12 mitochondrial malate dehydrogenase AAU29198 Lycopersicon esculentum 1253 27 70%
13 mitochondrial malate dehydrogenase AAU29198 Lycopersicon esculentum 236 6 17%
14 mitochondrial malate dehydrogenase AAU29198 Lycopersicon esculentum 120 2 8%
Phosphatase activity
15 Unknown/Putative uncharacterized protein ABK95024 Populus trichocarpa 191 5 10%
Nucleic acid binding/nucleotide binding
16 single-stranded DNA binding protein precursor AAL39067 Solanum tuberosum 365 9 25%
RNA binding/nucleotide binding
17 30 kDa ribonucleoprotein, chloroplastic P49313 Nicotiana plumbaginifolia 91 1 4%
Transferase activity
18 glutathione S-transferase, class-phi AAB65163 Solanum commersonii 221 14 18%
23 glutathione S-transferase, class-phi AAB65163 Solanum commersonii 221 14 18%
Unreviewed
19 nascent polypeptide associated complex alpha ACB32231 Solanum chacoense 281 7 44%
Carbonate dehydratase activity
20 carbonic anhydrase CAH60891 Solanum lycopersicum 198 5 12%
Threonine-type endopeptidase activity
21 unknown ABA81880 Solanum tuberosum 448 13 49%
35 Proteasome subunit beta type-1 O82531 Petunia x hybrida 641 20 44%
42 Proteasome subunit beta type-1 O82531 Petunia x hybrida 641 20 44%
Triose-phosphate isomerase activity
22 triose phosphate isomerase cytosolic isoform-like ABB02628 Solanum tuberosum 104 2 13%
Hydrogen ion transporting ATP synthase activity,rotational mechanism
24 ATP synthase delta chain, chloroplastic P32980 Nicotiana tabacum 133 4 14%
Calcium ion binding
25 Oxygen-evolving enhancer protein 2, chloroplastic P29795 Solanum lycopersicum 569 22 46%
26 Oxygen-evolving enhancer protein 2, chloroplastic P29795 Solanum lycopersicum 690 35 46%
27 Oxygen-evolving enhancer protein 2, chloroplastic P29795 Solanum lycopersicum 499 16 44%
30 Oxygen-evolving enhancer protein 2, chloroplastic P93566 Solanum tuberosum 171 3 18%
43 Oxygen-evolving enhancer protein 2, chloroplastic P29795 Solanum lycopersicum 677 16 44%
Structural constituent of ribosome
28 ribosomal protein L12-1a CAA44226 Nicotiana tabacum 410 7 38%
Hypothetical protein
29 Hypothetical protein AAG12570 Arabidopsis thaliana 237 5 15%
Defense response/response to biotic stimulus
31 TSI-1 protein CAA75803 Solanum lycopersicum 229 8 52%
32 TSI-1 protein CAA75803 Solanum lycopersicum 155 6 25%
Magnesium ion binding/monooxygenase activity/ribulose-bisphosphate carboxylase activity
33 ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit YP_514860 Solanum lycopersicum 260 6 10%
Nucleic acid binding/nucleotide binding
34 SGRP-1 CAA73034 Solanum commersonii 138 2 16%
Monooxygenase activity/ribulose-bisphosphate carboxylase activity
36 Ribulose bisphosphate carboxylase small chain 3A/3C, chloroplastic P07180 Solanum lycopersicum 428 16 62%
Hydrolase activity,hydrolyzing O-glycosyl compounds
37 LEXYL2 BAC98299 Solanum lycopersicum 418 9 18%
NAD or NADH binding/glyceraldehyde-3-phosphate dehydrogenase activity
38 glyceraldehyde-3-phosphate dehydrogenase CBE70550 Manihot michaelis 113 2 27%
Fructose-bisphosphate aldolase activity
39 fructose-bisphosphate aldolase, putative XP_002531508 Ricinus communis 710 22 27%
FAD binding/NADP or NADPH binding/ferredoxin-NADP+ reductase activity/poly(U) RNA binding
40 Contains similarity to ferredoxin-NADP+ reductase from Arabidopsis thaliana gb|AJ243705 and contains an oxidoreductase FAD/NAD-binding PF|00175 domain. AAF79911 Arabidopsis thaliana 159 5 9%
ATP binding/hydrogen ion transporting ATP synthase activity, rotational mechanism/proton-transporting ATPase activity, rotational mechanism
41 ATP synthase CF1 alpha subunit NP_051044 Arabidopsis thaliana 312 12 18%
45 ATP synthase CF1 epsilon chain ABB90047 Solanum tuberosum 582 19 56%
Pathogenesis-related protein
46 Pathogenesis-related protein STH-2 P17642 Solanum tuberosum 271
magnesium ion binding/monooxygenase activity/ribulose-bisphosphate carboxylase activity
47 ribulosebisphosphate carboxylase AAB01597 Solanum tuberosum 92 3 7%
48 Ribulose bisphosphate carboxylase large chain P28427 Jasminum simplicifolium subsp. suavissimum 84 2 10%
response to stress
49 Osmotin-like protein OSML15 P50703 Solanum commersonii 375 5 40%
Antimicrobial/Fungicide/Pathogenesis-related protein
50 pathogenesis-related protein PR P23 CAA50059 Solanum lycopersicum 276 4 36%