. Author manuscript; available in PMC: 2015 Jan 1.

Published in final edited form as: Genes Immun. 2014 May 1;15(5):275–281. doi: 10.1038/gene.2014.16

Table 3.

Summary of HyperLasso results from analysis of Box-Cox transformed log₁₀ viral load (VL) in seroprevalent individuals.^a

SNP ID	Chr 6 position	Gene	Class	MAF	Allele	Haplotype block number^b	Relation to VL
1st Analysis^c
rs3823376	30,052,163	HCG9	ncRNA	0.404	G	NA	Low
rs2517425	31,057,649	MUC21	intergenic	0.280	C	170	Low
rs2857114	32,887,974	HLA-DQB2\|HLA-DOB	downstream	0.457	C	346	High
2nd analysis^d
rs2857114	32,887,974	HLA-DQB2\|HLA-DOB	downstream	0.457	C	346	High

Testing additive effects for the minor alleles of single nucleotide polymorphisms (SNPs); MAF, minor allele frequency.

Not all eligible SNPs can be assigned to haplotype blocks (details are shown in Supplemental Materials). NA, not applicable.

First analysis has adjusted for sex and age at VL measurement; overall R²=14.8% for the model.

Second analysis has adjusted for sex, age at VL measurement, HLA-A*36, A*74, B*57, B*81 and DRB1*01:02; Overall R²=14.9% for the model.