Table 2.
SD distribution on different pig chromosomes
| Chr. name | Chr. length | Pairwise alignments | # of pairwise alignments within different distances | Length of pairwise alignments within different distances (bp) a | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| # | Total length (bp) | <1 Mb | 1-5 Mb | 5-10 Mb | 10-20 Mb | ≥20 Mb | Interchrom. | <1 Mb | 1-5 Mb | 5-10 Mb | 10-20 Mb | ≥20 Mb | Interchrom. | ||
| 1 | 315321322 | 591 | 3401742 | 222 | 32 | 2 | 39 | 26 | 270 | 2276538 | 246929 | 13940 | 295496 | 184744 | 1228308 |
| 2 | 162569375 | 704 | 5101992 | 507 | 2 | 1 | 32 | 162 | 3902938 | 20557 | 2826 | 689210 | 931033 | ||
| 3 | 144787322 | 295 | 2014549 | 136 | 1 | 9 | 2 | 147 | 1564008 | 4376 | 152465 | 11584 | 911669 | ||
| 4 | 143465943 | 287 | 1294886 | 235 | 6 | 1 | 45 | 1186413 | 49251 | 2684 | 111127 | ||||
| 5 | 111506441 | 151 | 1053226 | 101 | 3 | 47 | 806564 | 148002 | 215744 | ||||||
| 6 | 157765593 | 386 | 1395733 | 215 | 3 | 1 | 21 | 146 | 1126648 | 14458 | 8377 | 97078 | 220477 | ||
| 7 | 134764511 | 796 | 5214940 | 457 | 63 | 3 | 1 | 166 | 106 | 3585639 | 1101644 | 22484 | 3239 | 2E + 06 | 847577 |
| 8 | 148491826 | 119 | 995588 | 66 | 6 | 2 | 1 | 44 | 853267 | 35624 | 8115 | 4117 | 98206 | ||
| 9 | 153670197 | 374 | 1888550 | 280 | 2 | 92 | 1595039 | 8290 | 311899 | ||||||
| 10 | 79102373 | 282 | 1981250 | 126 | 20 | 4 | 2 | 26 | 104 | 1262050 | 286602 | 18420 | 10717 | 395811 | 548851 |
| 11 | 87690581 | 135 | 999435 | 87 | 13 | 35 | 918600 | 151163 | 55653 | ||||||
| 12 | 63588571 | 165 | 803476 | 134 | 3 | 4 | 24 | 737632 | 14381 | 10696 | 49824 | ||||
| 13 | 218635234 | 231 | 1238900 | 161 | 2 | 3 | 65 | 1080461 | 6220 | 11273 | 142648 | ||||
| 14 | 153851969 | 351 | 1595288 | 289 | 1 | 1 | 60 | 1425665 | 2202 | 4606 | 168661 | ||||
| 15 | 157681621 | 401 | 1640639 | 286 | 4 | 1 | 110 | 1458101 | 23471 | 9431 | 340589 | ||||
| 16 | 86898991 | 332 | 620789 | 205 | 127 | 546490 | 163337 | ||||||||
| 17 | 69701581 | 229 | 1089155 | 144 | 43 | 19 | 4 | 19 | 660648 | 434075 | 166802 | 19169 | 78385 | ||
| 18 | 61220071 | 65 | 275384 | 21 | 44 | 161453 | 130231 | ||||||||
| X | 144288218 | 368 | 2254851 | 254 | 16 | 2 | 4 | 4 | 88 | 1847734 | 93124 | 22251 | 70387 | 66276 | 247951 |
| Y | 1637716 | 5 | 34635 | 2 | 3 | 28541 | 6094 | ||||||||
aPairwise alignments were merged into non-overlapping intervals which are used for measurements of the length.