Table 3.
Genes that were differentially expressed in response to both the nNOS transgenic effect and the NO donor (SNP) effect in Arabidopsis
| ID | Description | nNOSa versus WT | SNPb versus control | MapMAN | |
|---|---|---|---|---|---|
| Bin code | Bin name | ||||
| At3g44720 | ADT4 (arogenate dehydratase 4) | 1.18 | 1.21 | 13.1.6 | Amino acid metabolism. synthesis |
| At4g35630 | PSAT; O-phospho-l-serine:2-oxoglutarate aminotransferase | –1.11 | 0.98 | 13.1.5 | Amino acid metabolism. synthesis |
| At4g09030 | AGP10 (ARABINOGALACTAN PROTEIN 10) | 1.11 | 1.12 | 10.5.1 | Cell wall. cell wall proteins. AGPs |
| At1g19300 | Polygalacturonate 4-alpha-galacturonosyltransferase | 1.34 | 1.04 | 10.3.2 | Cell wall. hemicellulose synthesis. glucuronoxylan |
| At2g38360 | PRA1.B4 (PRENYLATED RAB ACCEPTOR 1.B4) | 1.14 | 0.96 | 31.4 | Cell. vesicle transport |
| At5g65870 | ATPSK5 (PHYTOSULPHOKINE 5 PRECURSOR) | 1.20 | 1.64 | 33.99 | Development. unspecified |
| At3g15210 | RAP2.5/ERF4 | 1.39 | 1.74 | 17.5.2 | Hormone metabolism. ethylene.signal transduction |
| At1g23440 | Pyrrolidone-carboxylate peptidase family protein | –0.54 | 1.03 | 29.5 | Protein. degradation |
| At1g24140 | Matrixin family protein | 1.45 | 1.88 | 29.5.7 | Protein. degradation. metalloprotease |
| At5g27420 | Zinc finger (C3HC4-type RING finger) family protein | 1.49 | 2.98 | 29.5.11 | Protein. degradation. ubiquitin. E3. RING |
| At4g35480 | RING-H2 finger protein RHA3b | 1.24 | 1.59 | 29.5.11 | Protein. degradation. ubiquitin. E3. RING |
| At5g47610 | Zinc finger (C3HC4-type RING finger) family protein | 1.21 | –1.01 | 29.5.11 | Protein. degradation. ubiquitin. E3. RING |
| At5g66070 | Zinc finger (C3HC4-type RING finger) family protein | 1.02 | 1.83 | 29.5.11 | Protein. degradation. ubiquitin. E3. RING |
| At5g47070 | Protein kinase, putative | –1.08 | 1.39 | 29.4.1 | Protein. postranslational modification. kinase |
| At1g28480 | GRX480; electron carrier/protein disulfide oxidoreductase | 1.15 | 1.46 | 21.4 | Redox. glutaredoxins |
| At5g22250 | CCR4-NOT transcription complex protein, putative | 1.31 | 1.53 | 27.1.19 | RNA. processing. ribonucleases |
| At1g27730 | ZAT10/STZ (salt tolerance zinc finger) | 1.15 | 2.66 | 27.3.11 | RNA. regulation of transcription. zinc finger family |
| At5g54490 | PBP1 (PINOID-BINDING PROTEIN 1) | 1.11 | 2.39 | 30.3 | Signalling. calcium |
| At3g01830 | Calmodulin-related protein, putative | 1.00 | 2.95 | 30.3 | Signalling. calcium |
| At4g36040 | DNAJ heat shock N-terminal domain-containing protein (J11) | 1.00 | 0.70 | 20.2.1 | Stress. abiotic.heat |
| At1g72940 | Disease resistance protein (TIR-NBS class) | –1.05 | 0.77 | 20.1.7 | Stress. biotic. PR-proteins |
| At5g52760 | Heavy-metal-associated domain-containing protein | 1.01 | 1.33 | 35.1 | Not assigned. no ontology |
| At3g04640 | Glycine-rich protein | 1.22 | 1.55 | 35.1.40 | Not assigned. no ontology. Glycine-rich proteins |
| At1g56060 | Unknown protein | 1.07 | 2.48 | 35.2 | Not assigned. unknown |
| At2g25735 | Unknown protein | 1.05 | 1.84 | 35.2 | Not assigned. unknown |
| At2g28400 | Unknown protein | 1.02 | 2.38 | 35.2 | Not assigned. unknown |
| At5g53420 | Unknown protein | –1.02 | 0.77 | 35.2 | Not assigned. unknown |
| At1g13650 | 18S pre-ribosomal assembly protein gar2-related | –1.18 | –1.04 | 35.2 | Not assigned. unknown |
a The data for nNOScontrol versus WT control are from this study.
b The data for log2 fold change of SNP 3h versus 0h are from Ahlfors et al. (2009).
Values in bold indicate significant up-regulation, and those in italics indicates significant down-regulation.