Table 1.
Summary of de novo assembly in H. pluvialis
| Sequencing | No. of sequences | Bases |
|---|---|---|
| Raw sequencing reads | 2 141 048 | 848 713 419 |
| Average read length | 396 | |
| Pre-assembly | ||
| Trashed | 1337 | 3 795 275 |
| Reads used in assembly | 2 139 711 | 844 918 144 |
| Average read length | 395 | |
| Assembly | ||
| Contigs | ||
| Reads assembled as contigs | 1 453 995 | 558 385 452 |
| Number of contigs | 62 636 | 36 715 613 |
| Average length of contigs | 589 | |
| Isotigs | ||
| Number of isotigs | 34 947 | 54 330 087 |
| Average length of isotigs | 1555 | |
| Isotig N50 | 1737 | |
| Number of isogroups | 18 482 | |
| Singletons | 17 364 |