Table 3.
Isotigs of photosystem- and light-harvesting complex-related genes in the H. pluvialis transcriptome
| Isotig number | Description | Accession | Read ratio (red/green) |
|---|---|---|---|
| isotig04372–04373, 04376–04377 | Chloroplast photosystem I reaction centre subunit III (Chlamydomonas sp. ICE-L) | ADQ00182.1 | 0.59 |
| isotig21425–21426 | Photosystem I reaction centre, subunit VIII (Chlamydomonas reinhardtii) | XP_001703367.1 | 0.52 |
| isotig09349–09350 | Photosystem I reaction centre, subunit VIII (Chlamydomonas reinhardtii) | XP_001703367.1 | 0.60 |
| isotig26971 | Photosystem I reaction centre subunit XI (Chlamydomonas reinhardtii) | XP_001691084.1 | 0.63 |
| isotig22073–22074 | Photosystem I subunit O (Chlamydomonas reinhardtii) | XP_001700109.1 | 0.69 |
| isotig16438–16439 | Photosystem I reaction centre subunit V, chloroplast precursor (Volvox carteri f. nagariensis) | XP_002949489.1 | 0.48 |
| isotig12347–12350 | Photosystem I reaction centre subunit VI, chloroplast precursor (Volvox carteri f. nagariensis) | XP_002956888.1 | 0.52 |
| isotig22915–22916 | Photosystem I reaction center subunit psaK, chloroplast precursor (Volvox carteri f. nagariensis) | XP_002946059.1 | 0.50 |
| isotig28347 | Photosystem I 8.1kDa reaction centre subunit IV (Chlamydomonas reinhardtii) | XP_001702611.1 | 0.55 |
| isotig09222,09224 | Photosystem I 8.1kDa reaction centre subunit IV (Chlamydomonas reinhardtii) | XP_001702611.1 | 0.49 |
| isotig22287–22288 | Photosystem I 8.1kDa reaction centre subunit IV (Chlamydomonas reinhardtii) | XP_001702611.1 | 0.65 |
| isotig39653 | Photosystem I 8.1kDa reaction centre subunit IV (Chlamydomonas reinhardtii) | XP_001702611.1 | 0.41 |
| isotig30606 | Photosystem I 8.1kDa reaction centre subunit IV (Chlamydomonas reinhardtii) | XP_001702611.1 | 0.69 |
| isotig04580–04581, 04583–04586, 04589–04590 | 10kDa photosystem II polypeptide (Chlamydomonas reinhardtii) | XP_001696588.1 | 0.67 |
| isotig02670 | Photosystem II 47kDa protein (Dunaliella salina) | YP_005089828.1 | 0.94 |
| isotig45545 | Photosystem II protein I (Dunaliella salina) | YP_005089795.1 | 0.63 |
| isotig35094 | Photosystem II protein V (Dunaliella salina) | YP_005089824.1 | 0.95 |
| isotig29750 | Photosystem II protein Z (Dunaliella salina) | YP_005089815.1 | 0.95 |
| isotig02655–02657, 02659, 02661, 02668 | Photosystem II subunit B (Dunaliella tertiolecta) | AAX76829.1 | 0.96 |
| isotig20097–20098 | Photosystem II subunit W, chloroplast precursor (Volvox carteri f. nagariensis) | XP_002955022.1 | 0.46 |
| isotig31218 | Photosystem II subunit 28 (Chlamydomonas reinhardtii) | XP_001690537.1 | 0.72 |
| isotig09395–09397 | Oxygen-evolving enhancer protein 3 (Chlamydomonas reinhardtii) | XP_001701331.1 | 0.77 |
| isotig26863 | Photosystem II protein D2 (Chlamydomonas reinhardtii) | 1209190A | 0.73 |
| isotig03001–03002, 03006–03007, 03011–03012, 03016–03017, 03021–03022, 03026–03027 | Major light-harvesting chlorophyll a/b protein 2.1 (Dunaliella salina) | ABD91646.1 | 0.38 |
| isotig04198–04209 | Major light-harvesting chlorophyll a/b protein 2.1 (Dunaliella salina) | ABD91646.1 | 0.31 |
| isotig13851–13852 | Light-harvesting chlorophyll a/b-binding protein Lhcb5 (Chlamydomonas incerta) | ABD37916.1 | 0.50 |
| isotig19573–19574 | Light-harvesting chlorophyll a/b-binding protein Lhcb5 (Chlamydomonas incerta) | ABD37916.1 | 0.50 |
| isotig05175, 05178, 05180 | Light-harvesting chlorophyll a/b-binding protein Lhca6 (Chlamydomonas incerta) | ABD37908.1 | 0.44 |
| isotig01744–01788 | Light-harvesting chlorophyll a/b-binding protein of photosystem I (Volvox carteri f. nagariensis) | XP_002957031.1 | 0.66 |
| isotig05176–05177, 05181–05186 | Light-harvesting protein of photosystem I (Volvox carteri f. nagariensis) | XP_002958611.1 | 0.43 |
| isotig10497–10500 | Light-harvesting protein of photosystem I (Volvox carteri f. nagariensis) | XP_002957416.1 | 0.51 |
| isotig11150–11152 | Light-harvesting protein of photosystem I (Volvox carteri f. nagariensis) | XP_002948151.1 | 0.68 |
| isotig23593 | Light-harvesting protein of photosystem I (Volvox carteri f. nagariensis) | XP_002958611.1 | 0.24 |
| isotig28923 | Light-harvesting protein of photosystem I (Volvox carteri f. nagariensis) | XP_002958611.1 | 0.29 |
| isotig13760 | Light-harvesting protein of photosystem I (Chlamydomonas reinhardtii) | XP_001692548.1 | 0.60 |
| isotig13759, 13761 | Light-harvesting complex A protein (Volvox carteri f. nagariensis) | XP_002950368.1 | 0.60 |
| isotig20625 | Light-harvesting complex A (Volvox carteri f. nagariensis) | XP_002947520.1 | 0.03 |
| isotig40410 | Chloroplast light-harvesting chlorophyll-a/b-binding protein (Chlamydomonas incerta) | ABA01131.1 | 0.19 |
| isotig22267–22268 | Early light-inducible protein (Chlamydomonas reinhardtii) | XP_001695978.1 | 0.87 |
| isotig29810 | Early light-inducible protein (Chlamydomonas reinhardtii) | XP_001694751.1 | 0.71 |
| isotig03544,03547 | Low molecular mass early light-induced protein (Volvox carteri f. nagariensis) | XP_002958870.1 | 0.52 |
| isotig18101–18102 | Light-dependent protochlorophyllide reductase (Chlamydomonas reinhardtii) | XP_001689464.1 | 0.47 |
| isotig03028–03029 | Chlorophyll a/b-binding protein (Chlamydomonas moewusii) | P22686.1 | 0.39 |
| isotig21535–21536 | Chlorophyll a/b-binding protein (Chlamydomonas reinhardtii) | XP_001699932.1 | 0.88 |
| isotig06502–06507 | Chlorophyll a/b-binding protein of photosystem II (Volvox carteri f. nagariensis) | XP_002951424.1 | 0.56 |
| isotig39761 | Major chlorophyll-binding protein (Dunaliella salina) | P20865.1 | 0.10 |
| isotig13853 | Minor chlorophyll a/b-binding protein of photosystem II (Chlamydomonas reinhardtii) | XP_001695927.1 | 0.66 |
| isotig13130–13132 | Oxygen-evolving enhancer protein 1 of photosystem II (Chlamydomonas reinhardtii) | XP_001694699.1 | 0.58 |
| isotig19149–19150 | Oxygen-evolving enhancer protein 2 (Volvox carteri f. nagariensis) | XP_002956365.1 | 0.67 |
| isotig20107–20108 | Oxygen-evolving enhancer protein 2 (Volvox carteri f. nagariensis) | XP_002956365.1 | 0.40 |
| isotig27041 | Oxygen-evolving enhancer protein 1 of photosystem II (Chlamydomonas reinhardtii) | XP_001694699.1 | 0.54 |
| isotig27610 | Oxygen-evolving enhancer protein 1 of photosystem II (Chlamydomonas reinhardtii) | XP_001694699.1 | 0.83 |
| isotig27685 | Chloroplast oxygen-evolving complex/thylakoid lumenal 25.6kDa protein (Chlamydomonas incerta) | ABA01138.1 | 1.41 |
| isotig28381 | Oxygen-evolving enhancer protein 2 (Volvox carteri f. nagariensis) | XP_002956365.1 | 0.73 |
| isotig29135 | Chloroplast oxygen-evolving protein 3 (Chlamydomonas incerta) | ABA01140.1 | 0.76 |
| isotig29172 | Chloroplast oxygen-evolving protein 3 (Chlamydomonas incerta) | ABA01140.1 | 0.98 |
| isotig29506 | Oxygen-evolving enhancer protein 2 of photosystem II (Chlamydomonas reinhardtii) | XP_001694126.1 | 1.03 |
| isotig35073 | Oxygen-evolving enhancer protein 2 (Volvox carteri f. nagariensis) | XP_002956365.1 | 0.00 |
| isotig09313–09316 | Plastocyanin (Scenedesmus obliquus) | P26956.2 | 0.59 |