Table 5.
The orthopoxvirus (OPV) strains used in the study
| Virus species | Species abbreviation | Strain | ATI phenotypee | GenBank accession number |
|---|---|---|---|---|
| Camelpox virus |
CMPV |
CMS |
V0 |
AY009089 |
| |
|
M-96 |
V0 |
NC_003391 |
| Cowpox virus |
CPXV |
No-H1 |
V+ |
This study |
| No-F1 |
V+ |
This study |
||
| |
|
No-F2 |
V+ |
This study |
| |
|
Swe-H1 |
V+ |
This study |
| |
|
Swe-H2 |
V+ |
This study |
| |
|
FIN/T2000 |
V+ |
This study |
| No-H2# |
V+/ |
HQ680373 |
||
| |
|
NOR1994_MAN* |
V+ |
HQ420899 |
| FIN2000_MAN* |
V+ |
HQ420893 |
||
| Brighton Red |
V− |
NC_003663 |
||
| |
|
GER 91-3 |
V+ |
DQ437593 |
| |
|
GRI-90 |
V+ |
X94355 |
| GER1990_2 |
V+ |
HQ420896 |
||
| FRA2001_NANCY |
V+ |
HQ420894 |
||
| UK2000_K2984 |
V+ |
HQ420900 |
||
| AUS1999_867 |
V+ |
HQ407377 |
||
| GER1990_EP4 |
V+ |
HQ420895 |
||
| GER1998_2 |
V+ |
HQ420897 |
||
| GER2002_MKY |
V+ |
HQ420898 |
||
| Ectromelia virus |
ECTV |
Moscow |
V− |
NC_004105 |
| |
|
Naval |
V− |
- |
| Monkeypox virus |
MPXV |
Zaire |
V0 |
NC_03310 |
| |
|
Congo |
V0 |
DQ011154 |
| |
|
USA_039 |
V0 |
DQ011157 |
| |
|
Liberia |
V0 |
DQ011156 |
| Taterapox virus |
TATV |
DAH68 |
V0 |
NC_008291 |
| Horsepox virus |
HSPV |
MNR76 |
V0 |
DQ792504 |
| Vaccinia virus |
VACV |
CVA |
V0 |
AM501482 |
| |
|
Lister |
V0 |
AY678276 |
| |
|
Acambis |
V0 |
AY313847 |
| |
|
Western Reserve |
V0 |
NC_006998 |
| Variola virus |
VARV |
Niger_1969 |
V0 |
DQ441434 |
| |
|
Benin_1968 |
V0 |
DQ441416 |
| |
|
Brazil_1966 |
V0 |
DQ441419 |
| UNK_1952 | V0 | DQ441447 |
eThe ATI phenotypes of Fennoscandian CPXVs, CPXV-BR, ECTV-MOS were determined by electon microscopy as outlined in Methods while that of other OPVs were predicted based on the presence of full length atip and p4c genes. Strains that do not produce ATI were labelled V0. The V+ has virions embedded with the ATI matrix while the V− has no virions within or on the surface of the ATI matrix. The V+/ ATI have virions encrusted on the surface but not internalized within the matrix. #The V+/ ATI of CPXV-No-H2 was demonstrated in our previous report [33]. *CPXV_NOR1994_MAN and CPXV_FIN2000_MAN are clones of CPXV-No-H1 and CPXV-FIN/T2000 whose genomes are fully sequenced [20]. ECTV-NAV has not been assigned a GenBank accession number but its genome sequence is available at http://www.poxvirus.org.