Skip to main content
. 2014 Jul 28;9(7):e102232. doi: 10.1371/journal.pone.0102232

Table 1. Target overview of the microarray-based carbapenemases assay.

Probe Function Target Gene Function Reference Sequence
Species-specific marker basC acinetobactin biosynthesis of Acinetobacter baumannii AY571146.1 [6565∶7875]
Species-specific marker cfa colicin biosynthesis of Citrobacter freundii/braakii U09771.1 [1∶271]
Species-specific marker dnaE alpha subunit DNA polymerase III of Escherichia coli U00096.2 [205126∶208608]
Species-specific marker ecfX extracellular sigma factor of Pseudomonas aeruginosa DQ996558.1 [1∶528]
Species-specific marker efp elongation factor P of Acinetobacter baumannii CP001172.1 [1124029∶1124598]
Species-specific marker gad glutamate decarboxylase of Escherichia coli AE014075.1 [1756318∶1757787]
Species-specific marker ihfA alpha subunit of the integration host factors of Escherichia coli U00096.2 [1793277∶1793576]
Species-specific marker khe klebsolysine of Klebsiella pneumoniae AF293352.1 [91∶579]
Species-specific marker pld phospholipase D of Acinetobacter baumannii CP000521.1 [3477433∶3479057]
Beta lactamase blaOXA-1 narrow spectrum beta lactamase, class D beta-lactamase AY458016.1 [10718∶11548]
Beta lactamase blaOXA-2 narrow spectrum beta lactamase, class D beta-lactamase (Synonym: blaOXA 53 in Salmonella enterica) Consensus (OXA-2-group)
Beta lactamase blaOXA-7 narrow spectrum beta lactamase, class D beta-lactamase AY866525.1 [1931∶2731]
Beta lactamase blaOXA-9 narrow spectrum beta lactamase, class D beta-lactamase M55547.1 [2314∶3198]
Beta lactamase blaOXA-10-group narrow spectrum beta lactamase, class D beta-lactamase Consensus (OXA-10-group)
Beta lactamase blaOXA-60 narrow spectrum beta lactamase, class D beta-lactamase AF525303.2 [2771∶3586]
Beta lactamase blaCTX-M1/M15 extended-spectrum-beta-lactamase, class A beta-lactamase X92506.1 [63∶938]
Carbapenemase blaOXA-23 carbapenemase, class D beta-lactamase AJ132105.1 [972∶1793]
Carbapenemase blaOXA-40-group carbapenemase, class D beta-lactamase Consensus (OXA-40-group)
Carbapenemase blaOXA-48-group carbapenemase, class D beta-lactamase Consensus (OXA-48-group)
Carbapenemase blaOXA-51-group carbapenemase, class D beta-lactamase Consensus (OXA-51-group)
Carbapenemase blaOXA-54 carbapenemase, class D beta-lactamase AY500137.1 [1∶798]
Carbapenemase blaOXA-55 carbapenemase, class D beta-lactamase AY343493.1 [77∶946]
Carbapenemase blaOXA-58 carbapenemase, class D beta-lactamase AY665723.1 [3301∶4143]
Carbapenemase blaGIM carbapenemase, class B metallo beta-lactamase AJ620678.1 [1041∶1793]
Carbapenemase blaIND carbapenemase, class B metallo beta-lactamase Consensus
Carbapenemase blaKHM carbapenemase, class B metallo beta-lactamase AB364006.1 [62∶787]
Carbapenemase blaKPC carbapenemase, class B metallo beta-lactamase EU447304.1 [15∶896]
Carbapenemase blaNDM carbapenemase, class B metallo beta-lactamase FN396876.1 [2407∶3219]
Carbapenemase blaIMP carbapenemase, class B metallo beta-lactamase Consensus
Carbapenemase blaVIM carbapenemase, class B metallo beta-lactamase Consensus
Carbapenemase blaVIM-2 carbapenemase, class B metallo beta-lactamase AF191564.1 [1316∶2116]
Carbapenemase blaVIM-7 carbapenemase, class B metallo beta-lactamase AJ536835.1 [150∶947]