Table 1. Descriptive statistics of sequencing to determine the microbiotoa for each individual.
Sample ID | number of reads | coverage | npshannon index | Number of OTU total | Number of OTU >10 reads |
92 | 229 | 0.955975 | 1.690045 | 76 | 19 |
93 | 1584 | 0.99131 | 0.436879 | 74 | 28 |
94 | 669 | 0.977401 | 1.507996 | 242 | 20 |
95 | 738 | 0.986166 | 1.416086 | 226 | 27 |
96 | 503 | 0.953079 | 1.395581 | 149 | 29 |
97 | 385 | 0.946203 | 1.774329 | 86 | 33 |
98 | 955 | 0.98389 | 0.663968 | 79 | 30 |
99 | 770 | 0.978852 | 1.306709 | 114 | 29 |
100 | 1018 | 0.985946 | 0.658787 | 107 | 30 |
101 | 1482 | 0.994792 | 0.842304 | 188 | 21 |
102 | 1667 | 0.992283 | 0.691189 | 96 | 31 |
103 | 711 | 0.99179 | 0.946539 | 97 | 23 |
104 | 1072 | 0.987599 | 0.719994 | 159 | 25 |
105 | 1662 | 0.991645 | 0.371924 | 73 | 26 |
106 | 1304 | 0.995734 | 0.658557 | 93 | 18 |
107 | 1617 | 0.99416 | 0.290016 | 49 | 21 |
108 | 1237 | 0.990451 | 0.634742 | 73 | 30 |
109 | 1063 | 0.987778 | 0.679124 | 137 | 26 |
110 | 752 | 0.97281 | 0.656197 | 105 | 29 |
111 | 731 | 0.986217 | 0.63276 | 79 | 22 |
112 | 628 | 0.975779 | 0.630137 | 63 | 23 |
113 | 892 | 0.983549 | 0.446389 | 49 | 24 |
114 | 1333 | 0.993127 | 0.713271 | 127 | 22 |
115 | 1109 | 0.983313 | 1.020009 | 266 | 35 |
116 | 532 | 0.967611 | 2.709733 | 269 | 32 |
117 | 649 | 0.963145 | 2.108945 | 237 | 41 |
118 | 404 | 0.923977 | 2.645631 | 222 | 29 |
119 | 969 | 0.97625 | 1.019139 | 177 | 40 |
120 | 581 | 0.967647 | 1.975631 | 205 | 26 |
121 | 468 | 0.948413 | 2.692236 | 202 | 34 |
122 | 744 | 0.980551 | 0.876389 | 117 | 27 |
123 | 953 | 0.983204 | 0.832745 | 133 | 32 |
124 | 530 | 0.967846 | 2.29117 | 186 | 30 |
125 | 797 | 0.977901 | 0.703269 | 79 | 30 |
126 | 411 | 0.97561 | 0.904985 | 116 | 18 |
127 | 242 | 0.76 | 3.452235 | 182 | 32 |
128 | 1230 | 0.989637 | 0.504536 | 69 | 26 |
129 | 831 | 0.978723 | 1.537117 | 115 | 41 |
130 | 1449 | 0.983421 | 0.548428 | 123 | 38 |
131 | 499 | 0.969697 | 2.118408 | 144 | 29 |
132 | 431 | 0.945813 | 2.133064 | 181 | 25 |
133 | 494 | 0.96114 | 1.408929 | 117 | 35 |
134 | 746 | 0.980254 | 0.508333 | 38 | 22 |
135 | 662 | 0.977887 | 2.41624 | 180 | 36 |
136 | 754 | 0.987755 | 0.956343 | 118 | 18 |
137 | 2008 | 0.993154 | 0.557917 | 74 | 30 |
138 | 714 | 0.976619 | 1.632525 | 101 | 36 |
139 | 798 | 0.967632 | 1.534968 | 129 | 35 |
140 | 469 | 0.917197 | 3.267019 | 261 | 35 |
141 | 224 | 0.980892 | 0.662835 | 33 | 6 |
142 | 517 | 0.957377 | 2.388226 | 180 | 36 |
143 | 483 | 0.947195 | 2.446711 | 157 | 36 |
144 | 414 | 0.958848 | 3.124298 | 188 | 38 |
145 | 930 | 0.975443 | 1.391363 | 168 | 43 |
146 | 769 | 0.979661 | 2.024708 | 140 | 28 |
147 | 1219 | 0.995122 | 1.641489 | 118 | 17 |
148 | 1254 | 0.98244 | 1.127563 | 148 | 40 |
149 | 1074 | 0.972678 | 2.309049 | 318 | 55 |
150 | 1108 | 0.980583 | 2.793443 | 321 | 47 |
151 | 3082 | 0.998643 | 0.332436 | 58 | 16 |
152 | 1429 | 0.996561 | 1.820656 | 203 | 25 |
153 | 1955 | 0.995286 | 0.815557 | 167 | 27 |
154 | 1449 | 0.983366 | 1.74373 | 354 | 54 |
155 | 1074 | 0.973611 | 1.716763 | 321 | 41 |
156 | 1016 | 0.989316 | 0.588719 | 62 | 21 |
157 | 1483 | 0.984836 | 1.374063 | 216 | 46 |
158 | 2004 | 0.998944 | 0.791157 | 44 | 10 |
159 | 2043 | 0.997359 | 0.812388 | 92 | 18 |
160 | 2468 | 0.995741 | 0.305525 | 70 | 23 |
161 | 1215 | 0.979566 | 1.928985 | 346 | 48 |
162 | 1904 | 0.995286 | 0.821609 | 164 | 37 |
163 | 1046 | 0.985799 | 1.569251 | 188 | 40 |
164 | 1145 | 0.993814 | 0.744587 | 98 | 19 |
165 | 995 | 0.981481 | 1.421104 | 243 | 37 |
166 | 725 | 0.97921 | 2.459141 | 211 | 36 |
167 | 727 | 0.988743 | 2.142562 | 131 | 24 |
168 | 841 | 0.98908 | 2.297402 | 151 | 31 |
169 | 552 | 0.968116 | 2.76388 | 178 | 35 |
170 | 1204 | 0.99177 | 1.912832 | 162 | 32 |
172 | 2010 | 0.993946 | 0.610072 | 155 | 36 |
173 | 1454 | 0.987296 | 1.893132 | 316 | 51 |
174 | 1056 | 0.979651 | 2.949199 | 335 | 53 |
175 | 824 | 0.95098 | 2.845177 | 368 | 46 |
176 | 851 | 0.96729 | 2.039242 | 202 | 47 |
177 | 778 | 0.985507 | 2.23077 | 221 | 25 |
178 | 2142 | 0.998093 | 0.359619 | 52 | 13 |
The coverage was estimated by a Good's estimator index. npshannon: non parametric index of Shannon. OTU classification was done with a treshold of 97% identity.