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Tumor Classification Markers:
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| Luminal A–C: FOXA1, TFF3, GATA3, ESR1, KRT8, KRT18, SLC39A6, XBP1, HER2-like: ERBB2, GRB7. |
| Basal-like/Triple Negative: EGFR, BIRC5, KRT5, NOTCH1. |
| Metastasis to Lung: PTGS2, ID1, MMP2. |
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Transcription Factors: AR, ESR1, ESR2, FOXA1, CTNNB1, GATA3, HIC1, JUN, MYC, TP53, TP73, NOTCH1, NR3C1, PGR, PRDM2, RARB, RB1, XBP1. |
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Signal Transduction:
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| Steroid Receptor-Mediated: AR, BRCA1, PGR, CCNE1, ESR1, ESR2, IGF1, KRT19, CTNNB1, RB1. |
| Hedgehog: CCND1, BCL2, GLI1, SNAI2. |
| Glucocorticoid: NME1, IGFBP3, NR3C1. |
| WNT: CTNNB1, APC, CCND1, SFRP1. |
| PI3K/AKT: AKT1, IGF1, ERBB2, IGF1R, PTEN. |
| NOTCH: NOTCH1, BIRC5. |
| MAPK: TP73, MAPK1, MAPK3, MAPK8. |
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Angiogenesis: VEGFA, CTNNB1, CDH13, EGF, ID1, IL6, ERBB2, JUN, SERPINE1, NOTCH1, PLAU, PTEN, SLIT2, THBS1. |
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Adhesion: CDH1, CDH13, ADAM23, APC, BCL2, PTEN, CDKN2A, CSF1, CTNNB1, EGFR, TGFB1, THBS1, ERBB2. |
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Proteolysis: MMP2, MMP9, ADAM23, CST6, CTSD, PLAU, PYCARD. |
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Epithelial to Mesenchymal Transition: NOTCH1, SRC, CTNNB1, TGFB1, TWIST1. |
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Cell Cycle: CCNA1, CCND1, APC, BCL2, CCND2, MYC, PTEN, RASSF1, CCNE1, CDK2, CDKN1A, CDKN1C, CDKN2A, JUN, MKI67, RB1, SFN, TP53. |
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DNA Damage: TP53, TP73, APC, ATM, CCND1, CDKN1A, MAPK1, BRCA1, BRCA2, MGMT, MLH1, SFN. |
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Apoptosis: TP53, TP73, AKT1, BAD, BCL2, CDH1, CDKN1A, CDKN2A, GSTP1, IGF1, IL6, JUN, MUC1, NME1, RARB, APC, SFN, SFRP1, TWIST1. |
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Xenobiotic Transport: ABCB1, ABCG2. |
