Table 5. Top 20 upregulated genes of L. biglobosa ‘canadensis’ isolate J154 fourteen days after inoculation of B. napus cv. Westar.

Gene ID	Gene name	7dpi in planta (FPKM)	14dpi in planta (FPKM)	in vitro (FPKM)	Log2 (14dpi FPKM/in vitro FPKM)	Pfam description and accession	Pfam expect score
Lb_j154_P003075		156.1	116.5	0.01	14.0
Lb_j154_P003557		515.7	63.8	0.01	13.2	Pfam-B_18451 [PB018451]	3.6E-69
Lb_j154_P000524		886.3	18.0	0.01	11.3	Protein of unknown function (DUF3678) [PF12435.3]	1.2E-01
Lb_j154_P006347		341.8	76.1	0.04	11.0	Deuterolysin metalloprotease (M35) family [PF02102.10]	5.0E-86
Lb_j154_P001652		1083.8	151.2	0.1	10.6	Cellulase (glycosyl hydrolase family 5) [PF00150.13]	7.7E-20
Lb_j154_P009247		1012.1	146.1	0.1	10.4	Glycosyl hydrolase family 12 [PF01670.11]	1.2E-31
Lb_j154_P010735		5991.3	6460.7	4.7	10.4	Alcohol dehydrogenase GroES-like domain [PF08240.7]	1.6E-23
Lb_j154_P001707		63.1	9.2	0.01	10.4
Lb_j154_P006327		113.6	8.5	0.01	10.2
Lb_j154_P008556		1.4	4.9	0.01	9.4	Mediator complex subunit 27 [PF11571.3]	1.8E-01
Lb_j154_P000527		12641.8	8785.2	13.1	9.4	Pfam-B_14072 [PB014072]	4.3E-34
Lb_j154_P000350		32.9	4.3	0.01	9.3
Lb_j154_P006232		3710.7	5194.8	8.5	9.2
Lb_j154_P005193		1399.2	1588.4	2.8	9.2
Lb_j154_P003830		27.8	38.5	0.1	9.1	Serine carboxypeptidase [PF00450.17]	4.2E-87
Lb_j154_P009122		5.3	3.5	0.01	9.0
Lb_j154_P003076		158.0	118.9	0.2	9.0	Uncharacterized protein conserved in bacteria (DUF2321) [PF10083.4]	2.9E-01
Lb_j154_P001276		317.1	24.8	0.05	9.0	Pfam-B_19830 [PB019830]	2.6E-36
Lb_j154_P008991		3272.4	3034.9	6.1	9.0	Short-chain dehydrogenase [PF00106.20]	9.0E-27
Lb_j154_P003555		1776.8	1658.6	3.5	8.9	Alcohol dehydrogenase GroES-like domain [PF08240.7]	2.2E-22

The top 100 in planta up regulated genes are listed in Table S6 in file S2