Table 2.
Genes downregulated in E16 fibroblasts.
| Symbol | Gene Name | Symbol | Gene Name |
|---|---|---|---|
| Rps29 | ribosomal protein S29 | Cdk20 | cyclin-dependent kinase 20 |
| Gapdh | glyceraldehyde-3-phosphate dehydrogenase |
Pcdhg@ | protocadherin gamma cluster |
| Hmgn1 | high mobility group nucleosomal binding domain 1 |
Sun1 | Sad1 and UNC84 domain containing 1 |
| Lyrm4 | LYR motif containing 4 | Ilf3 | interleukin enhancer binding factor 3 |
| Dcun1d1 | DCN1, defective in cullin neddylation 1, domain containing 1 (S. cerevisiae) |
Akr1c19 | aldo-keto reductase family 1, member C19 |
| Fkbp1a | FK506 binding protein 1a | Mphosph8 | M-phase phosphoprotein 8 |
| Pfkm | phosphofructokinase, muscle | Pop5 | processing of precursor 5, ribonuclease P/MRP family (S. cerevisiae) |
| Adcy7 | adenylate cyclase 7 | Mpv17 | MpV17 mitochondrial inner membrane protein |
| Krt83 | keratin 83 | Ulk1 | Unc-51 like kinase 1 (C. elegans) |
| Rrp1 | ribosomal RNA processing 1 homolog (S. cerevisiae) |
Hspa5 | heat shock protein 5 |
| Lrrcc1 | leucine rich repeat and coiled- coil domain containing 1 |
Pax3 | paired box gene 3 |
| Ldb3 | LIM domain binding 3 | Ubr5 | ubiquitin protein ligase E3 component n-recognin 5 |
| Hadh | hydroxyacyl-Coenzyme A dehydrogenase |
Sorl1 | sortilin-related receptor, LDLR class A repeats-containing |
| Gls | glutaminase | Son | Son DNA binding protein |
| Msi2 | Musashi homolog 2 (Drosophila) |
Dnajc19 | DnaJ (Hsp40) homolog, subfamily C, member 19 |
| Rbfox2 | RNA binding protein, fox-1 homolog (C. elegans) 2 |
Lyl1 | lymphoblastomic leukemia 1 |
| Myo9a | myosin IXa | Csf2 | colony stimulating factor 2 (granulocyte-macrophage) |
| Cdk4 | cyclin-dependent kinase 4 | Tmem184a | transmembrane protein 184a |
| Gja1 | gap junction protein, alpha 1 | Plrg1 | pleiotropic regulator 1, PRL1 homolog (Arabidopsis) |
| Lck | lymphocyte protein tyrosine kinase |
Prl8a2 | prolactin family 8, subfamily a, member 2 |
| Rpl37a | ribosomal protein L37a | Stim1 | stromal interaction molecule 1 |
| Sh2b2 | SH2B adaptor protein 2 | Klhdc10 | kelch domain containing 10 |
| Spnb2 | spectrin beta 2 | 2700097O09Rik | RIKEN cDNA 2700097O09 gene |
| Arpp19 | cAMP-regulated phosphoprotein 19 |
Tmx2 | thioredoxin-related transmembrane protein 2 |
| Rela | v-rel reticuloendotheliosis viral oncogene homolog A (avian) |
Nip7 | nuclear import 7 homolog (S. cerevisiae) |
| H2-DMb1 | histocompatibility 2, class II, locus Mb1 |
Xdh | xanthine dehydrogenase |
| Wfdc5 | WAP four-disulfide core domain 5 |
Nynrin | NYN domain and retroviral integrase containing |
| Tyrp1 | tyrosinase-related protein 1 | Rmnd5a | required for meiotic nuclear division 5 homolog A (S. cerevisiae) |
| 0610031J06Rik | RIKEN cDNA 0610031J06 gene |
Ube2b | ubiquitin-conjugating enzyme E2B, RAD6 homology (S. cerevisiae) |
| septin 9 | Stoml3 | stomatin (Epb7.2)-like 3 | |
| Grina | glutamate receptor, ionotropic, N-methyl D-aspartate-associated protein 1 (glutamate binding) |
S100a9 | S100 calcium binding protein A9 (calgranulin B) |
| Mtch1 | mitochondrial carrier homolog (C. elegans) |
1 Ing5 | inhibitor of growth family, member 5 |
| Cpt2 | carnitine palmitoyltransferase 2 | B3galnt2 | UDP-GalNAc:betaGlcNAc beta 1,3-galactosaminyltransferase, polypeptide 2 |
| Ctnnb1 | catenin (cadherin associated protein), beta 1 |
Rabif | RAB interacting factor |
| Egfl6 | EGF-like-domain, multiple 6 | Pex11b | peroxisomal biogenesis factor 11 beta |
| Golph3 | golgi phosphoprotein 3 | Abhd16a | abhydrolase domain containing 16A |
| Tcea1 | transcription elongation factor A (SII) 1 |
Fkbpl | FK506 binding protein-like |
| Abcb10 | ATP-binding cassette, sub- family B (MDR/TAP), member 10 |
Calm2 | calmodulin 2 |
| Mtbp | Mdm2, transformed 3T3 cell double minute p53 binding protein |
Foxn3 | forkhead box N3 |
| Lias | lipoic acid synthetase | Kdm2b | lysine (K)-specific demethylase 2B |
| 2310011J03Rik | RIKEN cDNA 2310011J03 gene |
Gnpnat1 | glucosamine-phosphate N- acetyltransferase 1 |
| Cyth2 | cytohesin 2 | Bik | BCL2-interacting killer |
| Eif3h | eukaryotic translation initiation factor 3, subunit H |
Pde2a | phosphodiesterase 2A, cGMP- stimulated |
| Bcl2l2 | BCL2-like 2 | Rcc2 | regulator of chromosome condensation 2 |
| Tex2 | testis expressed gene 2 | Cd151 | CD151 antigen |
| Hnrnpa2b1 | heterogeneous nuclear ribonucleoprotein A2/B1 |
Zfp704 | zinc finger protein 704 |
| Tbx15 | T-box 15 | Sohlh1 | spermatogenesis and oogenesis specific basic helix-loop-helix 1 |
| Maoa | monoamine oxidase A | Antxr1 | anthrax toxin receptor 1 |
| Psmb9 | proteasome (prosome, macropain) subunit, beta type 9 (large multifunctional peptidase 2) |
Llph | LLP homolog, long-term synaptic facilitation (Aplysia) |
| Cdk18 | cyclin-dependent kinase 18 | Ywhae | tyrosine 3- monooxygenase/tryptophan 5- monooxygenase activation protein, epsilon polypeptide |
| Cd83 | CD83 antigen | Cdk16 | cyclin-dependent kinase 16 |
| Tns4 | tensin 4 | Adss | adenylosuccinate synthetase, non muscle |
| Slc38a10 | solute carrier family 38, member 10 |
Fam45a | family with sequence similarity 45, member A |
| Cdc42se1 | CDC42 small effector 1 | Fastkd2 | FAST kinase domains 2 |
| Smurf1 | SMAD specific E3 ubiquitin protein ligase 1 |
Heatr2 | HEAT repeat containing 2 |
| 1600002H07Rik | RIKEN cDNA 1600002H07 gene |
Tpr | translocated promoter region |
| Cpt1a | carnitine palmitoyltransferase 1a, liver |
Lasp1 | LIM and SH3 protein 1 |
| Cartpt | CART prepropeptide | Car2 | carbonic anhydrase 2 |
| Fam82b | family with sequence similarity 82, member B |
Taf10 | TAF10 RNA polymerase II, TATA box binding protein (TBP)-associated factor |
| Tdrd3 | tudor domain containing 3 | Stx2 | syntaxin 2 |
| Galt | galactose-1-phosphate uridyl transferase |
Commd10 | COMM domain containing 10 |
| Dync1i2 | dynein cytoplasmic 1 intermediate chain 2 |
Lap3 | leucine aminopeptidase 3 |
| Ctps2 | cytidine 5’-triphosphate synthase 2 |
Hacl1 | 2-hydroxyacyl-CoA lyase 1 |
| Naa35 | N(alpha)-acetyltransferase 35, NatC auxiliary subunit |
Scp2 | sterol carrier protein 2, liver |
| Dcun1d1 | DCN1, defective in cullin neddylation 1, domain containing 1 (S. cerevisiae) |
Iffo2 | intermediate filament family orphan 2 |
| Acd | adrenocortical dysplasia | Upf3b | UPF3 regulator of nonsense transcripts homolog B (yeast) |
| Cisd1 | CDGSH iron sulfur domain 1 | Lmbr1l | limb region 1 like |
| Btf3l4 | basic transcription factor 3-like 4 |
Tmco1 | transmembrane and coiled-coil domains 1 |
| Golph3l | golgi phosphoprotein 3-like | Klhl13 | kelch-like 13 (Drosophila) |
| Tbx15 | T-box 15 | Fbxo15 | F-box protein 15 |
| Rprd1a | regulation of nuclear pre-mRNA domain containing 1A |
Dnaja1 | DnaJ (Hsp40) homolog, subfamily A, member 1 |
| Cat | catalase | Mau2 | MAU2 chromatid cohesion factor homolog (C. elegans) |
| Dclk2 | doublecortin-like kinase 2 | Ywhah | tyrosine 3- monooxygenase/tryptophan 5- monooxygenase activation protein, eta polypeptide |
| Alx3 | aristaless-like homeobox 3 | 1110008L16Rik | RIKEN cDNA 1110008L16 gene |
| Myl6 | myosin, light polypeptide 6, alkali, smooth muscle and non- muscle |
Rbpms | RNA binding protein gene with multiple splicing |
| Sra1 | steroid receptor RNA activator 1 | Tmem38b | transmembrane protein 38B |
| Tmc6 | transmembrane channel-like gene family 6 |
Plac1l | placenta-specific 1-like |
| Brd7 | bromodomain containing 7 | Dusp26 | dual specificity phosphatase 26 (putative) |
| Cxcl1 | chemokine (C-X-C motif) ligand 1 |
Mmp3 | matrix metallopeptidase 3 |
| Ap1g1 | adaptor protein complex AP-1, gamma 1 subunit |
Cisd2 | CDGSH iron sulfur domain 2 |
| St3gal1 | ST3 beta-galactoside alpha-2,3- sialyltransferase 1 |
Son | Son DNA binding protein |
| Mylk3 | myosin light chain kinase 3 | 2200002K05Rik | RIKEN cDNA 2200002K05 gene |
| Pdk4 | pyruvate dehydrogenase kinase, isoenzyme 4 |
Krt20 | keratin 20 |
| Rtkn | rhotekin | Fam126a | family with sequence similarity 126, member A |
| Rab11a | RAB11a, member RAS oncogene family |
Nynrin | NYN domain and retroviral integrase containing |
| Epdr1 | ependymin related protein 1 (zebrafish) |
Smg6 | Smg-6 homolog, nonsense mediated mRNA decay factor (C. elegans) |
| Krt83 | keratin 83 | 1700021C14Rik | RIKEN cDNA 1700021C14 gene |
| Pax3 | paired box gene 3 | Cdc34 | cell division cycle 34 homolog (S. cerevisiae) |
| 9030624J02Rik | RIKEN cDNA 9030624J02 gene |
Rpl17 | ribosomal protein L17 |
| Csnk1g2 | casein kinase 1, gamma 2 | Rpgrip1 | retinitis pigmentosa GTPase regulator interacting protein 1 |
| Stk30 | serine/threonine kinase 30 | Ube2v2 | ubiquitin-conjugating enzyme E2 variant 2 |
| Macf1 | microtubule-actin crosslinking factor 1 |
Apbb2 | amyloid beta (A4) precursor protein-binding, family B, member 2 |
| Ap3b2 | adaptor-related protein complex 3, beta 2 subunit |
Crtam | cytotoxic and regulatory T cell molecule |
| Fubp1 | far upstream element (FUSE) binding protein 1 |
Pon2 | paraoxonase 2 |
| Arrdc3 | arrestin domain containing 3 | Nudt7 | nudix (nucleoside diphosphate linked moiety X)-type motif 7 |
| Vim | vimentin | Smg6 | Smg-6 homolog, nonsense mediated mRNA decay factor (C. elegans) |
| Limd1 | LIM domains containing 1 | Ssr2 | signal sequence receptor, beta |
| Fubp1 | far upstream element (FUSE) binding protein 1 |
Parl | presenilin associated, rhomboid- like |
| Igfbp5 | insulin-like growth factor binding protein 5 |
Csnk2a1 | casein kinase 2, alpha 1 polypeptide |
| H2-Q8 | histocompatibility 2, Q region locus 8 |
Cdk20 | cyclin-dependent kinase 20 |