Table 3.
Genes upregulated in E16 fibroblasts.
| Symbol | Gene Name | Symbol | Gene Name |
|---|---|---|---|
| Lpar4 | lysophosphatidic acid receptor 4 | Bola1 | bolA-like 1 (E. coli) |
| Ankrd17 | ankyrin repeat domain 17 | Tssk2 | testis-specific serine kinase 2 |
| C330019G07Rik | RIKEN cDNA C330019G07 gene | Grin1 | glutamate receptor, ionotropic, NMDA1 (zeta 1) |
| Golt1b | golgi transport 1 homolog B (S. cerevisiae) |
Asb12 | ankyrin repeat and SOCS box- containing 12 |
| Adprh | ADP-ribosylarginine hydrolase | Mtdh | metadherin |
| Cstf2t | cleavage stimulation factor, 3’ pre- RNA subunit 2, tau |
Ankrd1 | ankyrin repeat domain 1 (cardiac muscle) |
| Ifrg15 | interferon alpha responsive gene | Slc27a3 | solute carrier family 27 (fatty acid transporter), member 3 |
| 4632428N05Rik | RIKEN cDNA 4632428N05 gene | Darc | Duffy blood group, chemokine receptor |
| Gsk3b | glycogen synthase kinase 3 beta | Ezh1 | enhancer of zeste homolog 1 (Drosophila) |
| Slc35a1 | solute carrier family 35 (CMP-sialic acid transporter), member 1 |
AU019823 | expressed sequence AU019823 |
| Mepce | methylphosphate capping enzyme | Hist1h2ae | histone cluster 1, H2ae |
| Ptges | prostaglandin E synthase | Bdh2 | 3-hydroxybutyrate dehydrogenase, type 2 |
| Slc9a6 | solute carrier family 9 (sodium/hydrogen exchanger), member 6 |
Mphosph10 | M-phase phosphoprotein 10 (U3 small nucleolar ribonucleoprotein) |
| BC016495 | cDNA sequence BC016495 | Prkag1 | protein kinase, AMP-activated, gamma 1 non-catalytic subunit |
| Mocs1 | molybdenum cofactor synthesis 1 | Lrat | lecithin-retinol acyltransferase (phosphatidylcholine-retinol-O- acyltransferase) |
| Pbk | PDZ binding kinase | Gtf3c6 | general transcription factor IIIC, polypeptide 6, alpha |
| Ficd | FIC domain containing | Aasdhppt | aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase |
| Cdc42ep5 | CDC42 effector protein (Rho GTPase binding) 5 |
Ddx49 | DEAD (Asp-Glu-Ala-Asp) box polypeptide 49 |
| 4930528F23Rik | RIKEN cDNA 4930528F23 gene | Ilk | integrin linked kinase |
| Myo10 | myosin X | Kcnab3 | potassium voltage-gated channel, shaker-related subfamily, beta member 3 |
| Coro1a | coronin, actin binding protein 1A | Krt13 | keratin 13 |
| Ppp1r2 | protein phosphatase 1, regulatory (inhibitor) subunit 2 |
Med11 | mediator of RNA polymerase II transcription, subunit 11 homolog (S. cerevisiae) |
| Fank1 | fibronectin type 3 and ankyrin repeat domains 1 |
Appl1 | adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 1 |
| S100a11 | S100 calcium binding protein A11 (calgizzarin) |
B4galt1 | UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 1 |
| Zcchc3 | zinc finger, CCHC domain containing 3 |
5430437P03Rik | RIKEN cDNA 5430437P03 gene |
| Rsph9 | radial spoke head 9 homolog (Chlamydomonas) |
Lysmd4 | LysM, putative peptidoglycan- binding, domain containing 4 |
| Tex19.1 | testis expressed gene 19.1 | Atp4a | ATPase, H+/K+ exchanging, gastric, alpha polypeptide |
| Ift74 | intraflagellar transport 74 homolog (Chlamydomonas) |
Il10rb | interleukin 10 receptor, beta |
| Snap25 | synaptosomal-associated protein 25 | Dnajc10 | DnaJ (Hsp40) homolog, subfamily C, member 10 |
| Tipin | timeless interacting protein | 6-Sep | septin 6 |
| Rab3a | RAB3A, member RAS oncogene family |
Adal | adenosine deaminase-like |
| Foxn2 | forkhead box N2 | Tpm2 | tropomyosin 2, beta |
| Tmsb15l | thymosin beta 15b like | Ppp1r9a | protein phosphatase 1, regulatory (inhibitor) subunit 9A |
| Ppat | phosphoribosyl pyrophosphate amidotransferase |
Hspbp1 | HSPA (heat shock 70kDa) binding protein, cytoplasmic cochaperone 1 |
| Rbm34 | RNA binding motif protein 34 | Scnm1 | sodium channel modifier 1 |
| Mllt3 | translocated to, 3 | Ctnna2 | catenin (cadherin associated protein), alpha 2 |
| Cda | cytidine deaminase | Hao2 | hydroxyacid oxidase 2 |
| Plac9 | placenta specific 9 | Fam20c | family with sequence similarity 20, member C |
| Zfp821 | zinc finger protein 821 | Edn2 | endothelin 2 |
| Parp16 | poly (ADP-ribose) polymerase family, member 16 |
Rhoc | ras homolog gene family, member C |
| Uckl1 | uridine-cytidine kinase 1-like 1 | Cdkn2b | cyclin-dependent kinase inhibitor 2B (p15, inhibits CDK4) |
| Cct6a | chaperonin containing Tcp1, subunit 6a (zeta) |
Dhfr | dihydrofolate reductase |
| Acsl6 | acyl-CoA synthetase long-chain family member 6 |
Rabac1 | Rab acceptor 1 (prenylated) |
| Tspan31 | tetraspanin 31 | Scrn1 | secernin 1 |
| Spire1 | spire homolog 1 (Drosophila) | Slc33a1 | solute carrier family 33 (acetyl-CoA transporter), member 1 |
| Phtf2 | putative homeodomain transcription factor 2 |
Akirin2 | akirin 2 |
| Akap13 | A kinase (PRKA) anchor protein 13 | Wipi2 | WD repeat domain, phosphoinositide interacting 2 |
| Mdh2 | malate dehydrogenase 2, NAD (mitochondrial) |
Isoc1 | isochorismatase domain containing 1 |
| Mrpl49 | mitochondrial ribosomal protein L49 | Plekhf2 | pleckstrin homology domain containing, family F (with FYVE domain) member 2 |
| Efna2 | ephrin A2 | Tspan3 | tetraspanin 3 |
| Mbd4 | methyl-CpG binding domain protein 4 |
Ece2 | endothelin converting enzyme 2 |
| Vegfc | vascular endothelial growth factor C | Hspb7 | heat shock protein family, member 7 (cardiovascular) |
| Wrnip1 | Werner helicase interacting protein 1 | Atf4 | activating transcription factor 4 |
| Pikfyve | phosphoinositide kinase, FYVE finger containing |
D19Wsu162e | DNA segment, Chr 19, Wayne State University 162, expressed |
| Cyba | cytochrome b-245, alpha polypeptide | Srp14 | signal recognition particle 14 |
| Dstyk | dual serine/threonine and tyrosine protein kinase |
Il2 | interleukin 2 |
| Stmn3 | stathmin-like 3 | G3bp2 | GTPase activating protein (SH3 domain) binding protein 2 |
| Pepd | peptidase D | Inpp5d | inositol polyphosphate-5- phosphatase D |
| Chgb | chromogranin B | Slc30a4 | solute carrier family 30 (zinc transporter), member 4 |
| Thap7 | THAP domain containing 7 | Mmp14 | matrix metallopeptidase 14 (membrane-inserted) |
| 4833439L19Rik | RIKEN cDNA 4833439L19 gene | Lmbrd1 | LMBR1 domain containing 1 |
| Pdgfa | platelet derived growth factor, alpha | D10Wsu102e | DNA segment, Chr 10, Wayne State University 102, expressed |
| Pja1 | praja1, RING-H2 motif containing | Dock7 | dedicator of cytokinesis 7 |
| Car10 | carbonic anhydrase 10 | Camp | cathelicidin antimicrobial peptide |
| Trmt2a | TRM2 tRNA methyltransferase 2 homolog A (S. cerevisiae) |
Usp39 | ubiquitin specific peptidase 39 |
| Stat1 | signal transducer and activator of transcription 1 |
Ints4 | integrator complex subunit 4 |
| Trappc5 | trafficking protein particle complex 5 | Senp6 | SUMO/sentrin specific peptidase 6 |
| Zmat5 | zinc finger, matrin type 5 | Csnk2b | casein kinase 2, beta polypeptide |
| 1700012B15Rik | RIKEN cDNA 1700012B15 gene | Hras1 | Harvey rat sarcoma virus oncogene 1 |
| Dpep1 | dipeptidase 1 (renal) | Med19 | mediator of RNA polymerase II transcription, subunit 19 homolog (yeast) |
| Zyx | zyxin | Pgcp | plasma glutamate carboxypeptidase |
| Hpcal1 | hippocalcin-like 1 | Tmem41b | transmembrane protein 41B |
| Cdk5rap3 | CDK5 regulatory subunit associated protein 3 |
1700014N06Rik | RIKEN cDNA 1700014N06 gene |
| Ppp3cc | protein phosphatase 3, catalytic subunit, gamma isoform |
AI314180 | expressed sequence AI314180 |
| Mettl21a | methyltransferase like 21A | Prpsap1 | phosphoribosyl pyrophosphate synthetase-associated protein 1 |
| Tpd52l1 | tumor protein D52-like 1 | Gng13 | guanine nucleotide binding protein (G protein), gamma 13 |
| Hoxb2 | homeobox B2 | Snap23 | synaptosomal-associated protein 23 |
| Mobkl2a | MOB1, Mps One Binder kinase activator-like 2A (yeast) |
Mpp1 | membrane protein, palmitoylated |
| Txndc16 | thioredoxin domain containing 16 | Cnot1 | CCR4-NOT transcription complex, subunit 1 |
| Galntl5 | UDP-N-acetyl-alpha-D- galactosamine:polypeptide N- acetylgalactosaminyltransferase-like 5 |
Egf | epidermal growth factor |
| Mcm5 | minichromosome maintenance deficient 5, cell division cycle 46 (S. cerevisiae) |
Myo16 | myosin XVI |
| Tinf2 | Terf1 (TRF1)-interacting nuclear factor 2 |
Gatm | glycine amidinotransferase (L- arginine:glycine amidinotransferase) |
| Krt19 | keratin 19 | Krt24 | keratin 24 |
| Setd3 | SET domain containing 3 | Gas5 | growth arrest specific 5 |
| Bfar | bifunctional apoptosis regulator | Zfp318 | zinc finger protein 318 |
| Smarcd2 | SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 2 |
Rapgef4 | Rap guanine nucleotide exchange factor (GEF) 4 |
| Il12a | interleukin 12a | Carkd | carbohydrate kinase domain containing |
| Agpat3 | 1-acylglycerol-3-phosphate O- acyltransferase 3 |
2210012G02Rik | RIKEN cDNA 2210012G02 gene |
| Myc | myelocytomatosis oncogene | 1700001J03Rik | RIKEN cDNA 1700001J03 gene |
| Pon1 | paraoxonase 1 | Uqcrh | ubiquinol-cytochrome c reductase hinge protein |
| Slc44a3 | solute carrier family 44, member 3 | Sult1d1 | sulfotransferase family 1D, member 1 |
| Ccr5 | chemokine (C-C motif) receptor 5 | Paqr5 | progestin and adipoQ receptor family member V |
| Pex19 | peroxisomal biogenesis factor 19 | Syvn1 | synovial apoptosis inhibitor 1, synoviolin |
| Gadd45g | growth arrest and DNA-damage- inducible 45 gamma |
Cox17 | cytochrome c oxidase, subunit XVII assembly protein homolog (yeast) |
| 1700028P14Rik | RIKEN cDNA 1700028P14 gene | Crym | crystallin, mu |
| Cdh3 | cadherin 3 | Tbl2 | transducin (beta)-like 2 |
| Mettl21a | methyltransferase like 21A | Ogdh | oxoglutarate dehydrogenase (lipoamide) |
| Cenph | centromere protein H | Ypel1 | yippee-like 1 (Drosophila) |
| Khdc1b | KH domain containing 1B | Myl4 | myosin, light polypeptide 4 |
| Odz3 | odd Oz/ten-m homolog 3 (Drosophila) |
D2Ertd750e | DNA segment, Chr 2, ERATO Doi 750, expressed |
| Stab1 | stabilin 1 | Nme3 | non-metastatic cells 3, protein expressed in |
| Unkl | unkempt-like (Drosophila) | Sft2d1 | SFT2 domain containing 1 |
| Map1lc3b | microtubule-associated protein 1 light chain 3 beta |
Wwtr1 | WW domain containing transcription regulator 1 |
| Smurf2 | SMAD specific E3 ubiquitin protein ligase 2 |
Asb1 | ankyrin repeat and SOCS box- containing 1 |
| Ndufa13 | NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 13 |
Serpini2 | serine (or cysteine) peptidase inhibitor, clade I, member 2 |
| Rab11fip1 | RAB11 family interacting protein 1 (class I) |
Elk1 | ELK1, member of ETS oncogene family |
| Atp7a | ATPase, Cu++ transporting, alpha polypeptide |
Nubp1 | nucleotide binding protein 1 |
| Fcgbp | Fc fragment of IgG binding protein | Scaf11 | SR-related CTD-associated factor 11 |
| Josd2 | Josephin domain containing 2 | Acyp1 | acylphosphatase 1, erythrocyte (common) type |
| Irx5 | Iroquois related homeobox 5 (Drosophila) |
Rpl10 | ribosomal protein 10 |
| Stra13 | stimulated by retinoic acid 13 | Herc4 | hect domain and RLD 4 |
| Gys1 | glycogen synthase 1, muscle | Fam195b | family with sequence similarity 195, member B |
| Ccs | copper chaperone for superoxide dismutase |
Ubash3b | ubiquitin associated and SH3 domain containing, B |
| Slc1a5 | solute carrier family 1 (neutral amino acid transporter), member 5 |
Slc6a1 | solute carrier family 6 (neurotransmitter transporter, GABA), member 1 |
| Ngly1 | N-glycanase 1 | Angptl1 | angiopoietin-like 1 |
| Dcbld1 | discoidin, CUB and LCCL domain containing 1 |
Wdr54 | WD repeat domain 54 |
| Mast2 | microtubule associated serine/threonine kinase 2 |
Rbbp6 | retinoblastoma binding protein 6 |
| Crlf1 | cytokine receptor-like factor 1 | 1190007F08Rik | RIKEN cDNA 1190007F08 gene |
| Asnsd1 | asparagine synthetase domain containing 1 |
Dll1 | delta-like 1 (Drosophila) |
| Dcun1d5 | DCN1, defective in cullin neddylation 1, domain containing 5 (S. cerevisiae) |
Nppb | natriuretic peptide type B |
| Fam185a | family with sequence similarity 185, member A |
Nfatc3 | nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 3 |
| Hdac11 | histone deacetylase 11 | Lrch2 | leucine-rich repeats and calponin homology (CH) domain containing 2 |
| 1110034A24Rik | RIKEN cDNA 1110034A24 gene | Atp5b | ATP synthase, H+ transporting mitochondrial F1 complex, beta subunit |
| Rps4y2 | ribosomal protein S4, Y-linked 2 | Rrp12 | ribosomal RNA processing 12 homolog (S. cerevisiae) |
| Zfp868 | zinc finger protein 868 | Dhx16 | DEAH (Asp-Glu-Ala-His) box polypeptide 16 |
| Psmc2 | proteasome (prosome, macropain) 26S subunit, ATPase 2 |
Dmap1 | DNA methyltransferase 1-associated protein 1 |
| Rbm39 | RNA binding motif protein 39 | Slc1a4 | solute carrier family 1 (glutamate/neutral amino acid transporter), member 4 |
| Ctnna1 | catenin (cadherin associated protein), alpha 1 |
Smc4 | structural maintenance of chromosomes 4 |
| Cyth1 | cytohesin 1 | Camsap1 | calmodulin regulated spectrin- associated protein 1 |
| Sco1 | SCO cytochrome oxidase deficient homolog 1 (yeast) |
Cntln | centlein, centrosomal protein |
| Calb1 | calbindin 1 | Ckap2l | cytoskeleton associated protein 2- like |
| 2310001H18Rik | RIKEN cDNA 2310001H18 gene | Katna1 | katanin p60 (ATPase-containing) subunit A1 |
| Sh3d19 | SH3 domain protein D19 | Speg | SPEG complex locus |
| Acadsb | acyl-Coenzyme A dehydrogenase, short/branched chain |
Nsdhl | NAD(P) dependent steroid dehydrogenase-like |
| Map2k2 | mitogen-activated protein kinase kinase 2 |
Lsm6 | LSM6 homolog, U6 small nuclear RNA associated (S. cerevisiae) |
| Cd3g | CD3 antigen, gamma polypeptide | Tgm1 | transglutaminase 1, K polypeptide |
| Sepn1 | selenoprotein N, 1 | Notch1 | Notch gene homolog 1 (Drosophila) |
| Ndufa3 | NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 3 |
Ndufa11 | NADH dehydrogenase (ubiquinone) 1 alpha subcomplex 11 |
| B3gnt7 | UDP-GlcNAc:betaGal beta-1,3-N- acetylglucosaminyltransferase 7 |
Srsf3 | serine/arginine-rich splicing factor 3 |
| Stat6 | signal transducer and activator of transcription 6 |
Vps26b | vacuolar protein sorting 26 homolog B (yeast) |
| Nol4 | nucleolar protein 4 | Cetn3 | centrin 3 |
| Rpl37a | ribosomal protein L37a | Tprgl | transformation related protein 63 regulated like |
| Lhx6 | LIM homeobox protein 6 | Tgif2 | TGFB-induced factor homeobox 2 |
| Myof | myoferlin | BC016423 | cDNA sequence BC016423 |
| Cox5a | cytochrome c oxidase, subunit Va | Mycbp2 | MYC binding protein 2 |
| Rpl19 | ribosomal protein L19 | Jak2 | Janus kinase 2 |
| Cyth2 | cytohesin 2 | Metap2 | methionine aminopeptidase 2 |
| Chchd3 | coiled-coil-helix-coiled-coil-helix domain containing 3 |
Myh8 | myosin, heavy polypeptide 8, skeletal muscle, perinatal |
| Runx1t1 | translocated to, 1 (cyclin D-related) | Ehd3 | EH-domain containing 3 |
| Rpl3 | ribosomal protein L3 | Jak2 | Janus kinase 2 |
| Syf2 | SYF2 homolog, RNA splicing factor (S. cerevisiae) |
Lefty1 | left right determination factor 1 |
| Cyp26a1 | cytochrome P450, family 26, subfamily a, polypeptide 1 |
Dynll2 | dynein light chain LC8-type 2 |
| Agfg1 | ArfGAP with FG repeats 1 | Fam57a | family with sequence similarity 57, member A |
| Pin1 | protein (peptidyl-prolyl cis/trans isomerase) NIMA-interacting 1 |
Srp72 | signal recognition particle 72 |
| Tnfrsf12a | tumor necrosis factor receptor superfamily, member 12a |
Snhg11 | small nucleolar RNA host gene 11 |
| Ttc4 | tetratricopeptide repeat domain 4 | Celf4 | CUGBP, Elav-like family member 4 |
| G3bp2 | GTPase activating protein (SH3 domain) binding protein 2 |
1810043G02Rik | RIKEN cDNA 1810043G02 gene |
| Tm4sf20 | transmembrane 4 L six family member 20 |
Zrsr1 | zinc finger (CCCH type), RNA binding motif and serine/arginine rich 1 |
| Gosr2 | golgi SNAP receptor complex member 2 |
Il2ra | interleukin 2 receptor, alpha chain |
| Ndufaf1 | NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, assembly factor 1 |
Wnt4 | wingless-related MMTV integration site 4 |
| 8030474K03Rik | RIKEN cDNA 8030474K03 gene | Fam187b | family with sequence similarity 187, member B |
| Stoml2 | stomatin (Epb7.2)-like 2 | Bola1 | bolA-like 1 (E. coli) |