Table 11.
qRT-PCR primers for transcriptional analysis of genome neighborhoods
| Primer | Sequence (5′–3′) |
|---|---|
| Sliv-Sco16srRNA-F | CCGTACAATGAGCTGCGATA |
| Sliv-Sco16srRNA-R | GAACTGAGACCGGCTTTTTG |
| Sliv-Sco6289-F | GACCCTGAAGGTCGTCGTC |
| Sliv-Sco6289-R | GGTGACCGTGACGTCCAT |
| Sliv-Sco6290-F | GTCTTCTGCGGCATCGG |
| Sliv-Sco6290-R | AGTCATCGTCGTCCTCCA |
| Sliv-Sco6291-F | GCCGACCTCGACGAAGA |
| Sliv-Sco6291-R | TTGTCGGTTTCACTGCTGTC |
| Sliv-Sco6292-F | CATCGACACCAAGGTGGAC |
| Sliv-Sco6292-R | TGACCCCGACGATGTACC |
| Sliv-Sco6293-F | GACTACGGCGTGCTCTTCAT |
| Sliv-Sco6293-R | CTCGGTGACCTCGACCAT |
| Bc0905-F | CTTCGCTGACGGACAAGTAGA |
| Bc0905-R | TGTACCGCTGTTACGGACAA |
| Bc0906-F | ACTACGAACGCAACCACACC |
| Bc0906-R | CGGAACTTGAAGGTCTCCTGT |
| Bc2832-F | TACCAGGCTTTGGTCCTGAA |
| Bc2832-R | ATTTGCCGCCAAGCTCTAAC |
| Bc2833-F | GGATGGGTTTCAGTAGCAGGA |
| Bc2833-R | CCTAGTCTTGGATAGCGAGAAGG |
| Bc2834-F | AGGTGCGTATTCGCCAGAAA |
| Bc2834-R | CCTGGCGAACGTACGATAAA |
| Bc2835-F | AACAGACCCGTGTCATCCTG |
| Bc2835-R | ACTAAGCCAGCCGGTGTATCT |
| Bc2836-F | CCTTGCATTCTCGCTTCTGT |
| Bc2836-R | AATCTTAGGAGCCCACACACC |
| Atu3947-F | TCCGGCCAAGTATGTGAAAG |
| Atu3947-R | CTATAGCCGTTCGCAGCAAG |
| Atu3948-F | ATTTCGCCCGTGATCTGTC |
| Atu3948-R | CGGCATCCACAATAATCCAG |
| Atu3949-F | GCGAACAGGCTGAAGAGATG |
| Atu3949-R | CGGCGGTAATTCCTGTTTG |
| Atu3950-F | GCTGCCGAACATATCAAGGT |
| Atu3950-R | GACCTTCGCGGTTATCTGGT |
| Atu3951-F | TGACGGACTCCAGCCTTATC |
| Atu3951-R | ATGTAACATCGGCGTGGTCT |
| Atu3952-F | GATATCGTCAAGGGCGGTTT |
| Atu3952-R | ACGCAGAGCCTTCATGTGTT |
| Atu3953-F | CAACGTCGCCAGTTACCTTC |
| Atu3953-R | GGCTGAGATCAACGACATCC |
| Atu3958-F | GGCGGCTGATACACATCTTC |
| Atu3958-R | AAAGTTGGTGCTTCGTCAGG |
| Atu3959-F | CATTCCTGACACGATCCACA |
| Atu3959-R | CAGCATCAGCAAAGGGAAGT |
| Atu3960-F | GAATGTCGTCGCCATCAAG |
| Atu3960-R | TCGTAGAGTGCCACATGCTC |
| Atu3961-F | TTCGGCACTTCTTTCTGGTC |
| Atu3961-R | GCTCGCCTGCAGATAAACA |
| Atu4675-F | TTCCTGTTATCGTCGGCACT |
| Atu4675-R | GCCTTGAAGTGAGCCTTCTG |
| Atu4676-F | ACGGCTATCGTGAAGGTCAA |
| Atu4676-R | GAATAGCTCGGGCACATCAC |
| Atu4682-F | TCCTCAGAAAGACCGACACC |
| Atu4682-R | GTGAATGTGCCGCAGGTAA |
| Atu4684-F | CCTCGGCAAACTCAAGGTC |
| Atu4684-R | GCGAAGAGGCAGAAGGAAA |
| Atu4691-F | AAGGGCGATATGGGTCTTTC |
| Atu4691-R | GAGCTCTTCGATGCTGTCGT |