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. 2014 Jul 29;5:249. doi: 10.3389/fgene.2014.00249

Table 1.

miRNAs encoded by viruses known to infect human.

Virus Encoded miRNAs
Epstein Barr Virus ebv-miR-BART4-3p CACAUCACGUAGGCACCAGGUGU
ebv-miR-BART20-3p CAUGAAGGCACAGCCUGUUACC
ebv-miR-BHRF1-2-5p AAAUUCUGUUGCAGCAGAUAGC
ebv-miR-BART22 UUACAAAGUCAUGGUCUAGUAGU
ebv-miR-BART14-3p UAAAUGCUGCAGUAGUAGGGAU
ebv-miR-BART10-3p UACAUAACCAUGGAGUUGGCUGU
ebv-miR-BART7-3p CAUCAUAGUCCAGUGUCCAGGG
ebv-miR-BART16 UUAGAUAGAGUGGGUGUGUGCUCU
ebv-miR-BART15 GUCAGUGGUUUUGUUUCCUUGA
ebv-miR-BART9-3p UAACACUUCAUGGGUCCCGUAGU
ebv-miR-BART21-5p UCACUAGUGAAGGCAACUAAC
ebv-miR-BART3-3p CGCACCACUAGUCACCAGGUGU
ebv-miR-BART7-5p CCUGGACCUUGACUAUGAAACA
ebv-miR-BART1-3p UAGCACCGCUAUCCACUAUGUC
ebv-miR-BART11-5p UCAGACAGUUUGGUGCGCUAGUUG
ebv-miR-BART6-3p CGGGGAUCGGACUAGCCUUAGA
ebv-miR-BART13-5p AACCGGCUCGUGGCUCGUACAG
ebv-miR-BART1-5p UCUUAGUGGAAGUGACGUGCUGUG
ebv-miR-BART2-5p UAUUUUCUGCAUUCGCCCUUGC
ebv-miR-BART2-3p AAGGAGCGAUUUGGAGAAAAUAAA
ebv-miR-BHRF1-3 UAACGGGAAGUGUGUAAGCACA
ebv-miR-BART14-5p UACCCUACGCUGCCGAUUUACA
ebv-miR-BART18-5p UCAAGUUCGCACUUCCUAUACA
ebv-miR-BART4-5p GACCUGAUGCUGCUGGUGUGCU
ebv-miR-BART8-3p GUCACAAUCUAUGGGGUCGUAGA
ebv-miR-BHRF1-2-3p UAUCUUUUGCGGCAGAAAUUGA
ebv-miR-BART20-5p UAGCAGGCAUGUCUUCAUUCC
ebv-miR-BART13-3p UGUAACUUGCCAGGGACGGCUGA
ebv-miR-BART19-3p UUUUGUUUGCUUGGGAAUGCU
ebv-miR-BART8-5p UACGGUUUCCUAGAUUGUACAG
ebv-miR-BART5-5p CAAGGUGAAUAUAGCUGCCCAUCG
ebv-miR-BART17-3p UGUAUGCCUGGUGUCCCCUUAGU
ebv-miR-BART17-5p UAAGAGGACGCAGGCAUACAAG
ebv-miR-BHRF1-1 UAACCUGAUCAGCCCCGGAGUU
ebv-miR-BART19-5p ACAUUCCCCGCAAACAUGACAUG
ebv-miR-BART18-3p UAUCGGAAGUUUGGGCUUCGUC
ebv-miR-BART6-5p UAAGGUUGGUCCAAUCCAUAGG
ebv-miR-BART12 UCCUGUGGUGUUUGGUGUGGUU
ebv-miR-BART21-3p CUAGUUGUGCCCACUGGUGUUU
ebv-miR-BART3-5p ACCUAGUGUUAGUGUUGUGCU
ebv-miR-BART5-3p GUGGGCCGCUGUUCACCU
ebv-miR-BART9-5p UACUGGACCCUGAAUUGGAAAC
ebv-miR-BART10-5p GCCACCUCUUUGGUUCUGUACA
ebv-miR-BART11-3p ACGCACACCAGGCUGACUGCC
Herpes Simplex Virus 1 hsv1-miR-H8-5p UAUAUAGGGUCAGGGGGUUC
hsv1-miR-H13 UUAGGGCGAAGUGCGAGCACUGG
hsv1-miR-H1-5p GAUGGAAGGACGGGAAGUGGA
hsv1-miR-H6-5p GGUGGAAGGCAGGGGGGUGUA
hsv1-miR-H11 UUAGGACAAAGUGCGAACGC
hsv1-miR-H14-3p UCUGUGCCGGGCGCGUGCGAC
hsv1-miR-H7-5p AAAGGGGUCUGCAACCAAAGG
hsv1-miR-H26 UGGCUCGGUGAGCGACGGUC
hsv1-miR-H7-3p UUUGGAUCCCGACCCCUCUUC
hsv1-miR-H8-3p GCCCCCGGUCCCUGUAUAUA
hsv1-miR-H6-3p CACUUCCCGUCCUUCCAUCCC
hsv1-miR-H1-3p UACACCCCCCUGCCUUCCACCCU
hsv1-miR-H2-3p CCUGAGCCAGGGACGAGUGCGACU
hsv1-miR-H3-3p CUGGGACUGUGCGGUUGGGAC
hsv1-miR-H4-5p GGUAGAGUUUGACAGGCAAGCA
hsv1-miR-H17 UGGCGCUGGGGCGCGAGGCGG
hsv1-miR-H14-5p AGUCGCACUCGUCCCUGGCUCAGG
hsv1-miR-H4-3p CUUGCCUGUCUAACUCGCUAGU
hsv1-miR-H16 CCAGGAGGCUGGGAUCGAAGGC
hsv1-miR-H5-5p GGGGGGGUUCGGGCAUCUCUAC
hsv1-miR-H2-5p UCGCACGCGCCCGGCACAGACU
hsv1-miR-H12 UUGGGACGAAGUGCGAACGCUU
hsv1-miR-H18 CCCGCCCGCCGGACGCCGGGACC
hsv1-miR-H15 GGCCCCGGGCCGGGCCGCCACG
hsv1-miR-H5-3p GUCAGAGAUCCAAACCCUCCGG
hsv1-miR-H3-5p CUCCUGACCGCGGGUUCCGAGU
Herpes Simplex Virus 2 hsv2-miR-H11-3p UUAGGACAAAGUGCGAACGCUU
hsv2-miR-H7-5p AAAGGGGUCCGUAACCAAAGG
hsv2-miR-H23-3p ACGAGCUUCGCGGUACUACUC
hsv2-miR-H19 UUCGCUAGGCAAGCACGGACUG
hsv2-miR-H4-5p GAGUUCACUCGGCACGCAUGC
hsv2-miR-H3 UUUGGGAGUCUGCGGUUGGGAG
hsv2-miR-H20 UUUGGUUACGGACCCCUUUCU
hsv2-miR-H21 AUAACGUCAUGCUGUCUACGG
hsv2-miR-H9-3p UUCCCACCUCGGUCUCCUCCUC
hsv2-miR-H6-3p CCCAUCUUCUGCCCUUCCAUCCU
hsv2-miR-H23-5p AGGCCGUGGAGCUUGCCAGC
hsv2-miR-H7-3p UUUGGAUUCCGACCCCUCGUC
hsv2-miR-H11-5p AAGCGUUCGCACUUUGUCCUA
hsv2-miR-H5 GGGGGGGCUCGGGCCACCUGACC
hsv2-miR-H4-3p CCGUGCUUGCCUAGCGAACUC
hsv2-miR-H10 GGGUGCGGGGGUGGGCGG
hsv2-miR-H22 AGGGGUCUGGACGUGGGUGGGC
hsv2-miR-H25 CUGCGCGGCGGAGACCGGGAC
hsv2-miR-H13 UUAGGGCAAAGUGCGAGCACUG
hsv2-miR-H2 UCUGAGCCUGGGUCAUGCGCGA
hsv2-miR-H9-5p CUCGGAGGUGGAGUCGCGGU
hsv2-miR-H6-5p AAUGGAAGGCGAGGGGAUGC
hsv2-miR-H12 UUAGGACGAAGUGCGAACGCUU
hsv2-miR-H24 CUCCGGCGCCUUCCCCCCGCCCU
BK bkv-miR-B1-3p UGCUUGAUCCAUGUCCAGAGUC
Polyomavirus bkv-miR-B1-5p AUCUGAGACUUGGGAAGAGCAU
Human cytomegalovirus hcmv-miR-US25-1-3p UCCGAACGCUAGGUCGGUUCUC
hcmv-miR-US25-2-3p AUCCACUUGGAGAGCUCCCGCGG
hcmv-miR-UL36-3p UUUCCAGGUGUUUUCAACGUGC
hcmv-miR-US4 CGACAUGGACGUGCAGGGGGAU
hcmv-miR-UL70-3p GGGGAUGGGCUGGCGCGCGG
hcmv-miR-US25-2-5p AGCGGUCUGUUCAGGUGGAUGA
hcmv-miR-UL70-5p UGCGUCUCGGCCUCGUCCAGA
hcmv-miR-UL22A-5p UAACUAGCCUUCCCGUGAGA
hcmv-miR-UL36-5p UCGUUGAAGACACCUGGAAAGA
hcmv-miR-US25-1-5p AACCGCUCAGUGGCUCGGACC
hcmv-miR-UL112 AAGUGACGGUGAGAUCCAGGCU
hcmv-miR-US33-5p GAUUGUGCCCGGACCGUGGGCG
hcmv-miR-UL148D UCGUCCUCCCCUUCUUCACCG
hcmv-miR-US5-2 UUAUGAUAGGUGUGACGAUGUC
hcmv-miR-US5-1 UGACAAGCCUGACGAGAGCGU
hcmv-miR-UL22A-3p UCACCAGAAUGCUAGUUUGUAG
hcmv-miR-US33-3p UCACGGUCCGAGCACAUCCA
Human Immunodeficiency virus hiv1-miR-H1 CCAGGGAGGCGUGCCUGGGC
hiv1-miR-N367 ACUGACCUUUGGAUGGUGCUUCAA
hiv1-miR-TAR-3p UCUCUGGCUAACUAGGGAACCCA
hiv1-miR-TAR-5p UCUCUCUGGUUAGACCAGAUCUGA
JC polyomavirus jcv-miR-J1-3p UGCUUGAUCCAUGUCCAGAGUC
jcv-miR-J1-5p UUCUGAGACCUGGGAAAAGCAU
Kaposi's sarcoma associated herpesvirus kshv-miR-K12-5-3p UAGGAUGCCUGGAACUUGCCGGU
kshv-miR-K12-4-3p UAGAAUACUGAGGCCUAGCUGA
kshv-miR-K12-8-5p ACUCCCUCACUAACGCCCCGCU
kshv-miR-K12-10a-3p UAGUGUUGUCCCCCCGAGUGGC
kshv-miR-K12-5-5p AGGUAGUCCCUGGUGCCCUAAGG
kshv-miR-K12-8-3p CUAGGCGCGACUGAGAGAGCA
kshv-miR-K12-6-3p UGAUGGUUUUCGGGCUGUUGAG
kshv-miR-K12-6-5p CCAGCAGCACCUAAUCCAUCGG
kshv-miR-K12-3-5p UCACAUUCUGAGGACGGCAGCGA
kshv-miR-K12-2-5p AACUGUAGUCCGGGUCGAUCUG
kshv-miR-K12-12-3p UGGGGGAGGGUGCCCUGGUUGA
kshv-miR-K12-11-5p GGUCACAGCUUAAACAUUUCUAGG
kshv-miR-K12-1-3p GCAGCACCUGUUUCCUGCAACC
kshv-miR-K12-9-3p CUGGGUAUACGCAGCUGCGUAA
kshv-miR-K12-12-5p AACCAGGCCACCAUUCCUCUCCG
kshv-miR-K12-10b UGGUGUUGUCCCCCCGAGUGGC
kshv-miR-K12-3-3p UCGCGGUCACAGAAUGUGACA
kshv-miR-K12-11-3p UUAAUGCUUAGCCUGUGUCCGA
kshv-miR-K12-1-5p AUUACAGGAAACUGGGUGUAAGC
kshv-miR-K12-9-5p ACCCAGCUGCGUAAACCCCGCU
kshv-miR-K12-2-3p GAUCUUCCAGGGCUAGAGCUG
kshv-miR-K12-7-5p AGCGCCACCGGACGGGGAUU
Merkel cell polyomavirus mcv-miR-M1-5p UGGAAGAAUUUCUAGGUACACU
mcv-miR-M1-3p UGUGCUGGAUUCUCUUCCUGAA
Simian virus 40 sv40-miR-S1-3p GCCUGUUUCAUGCCCUGAGU
sv40-miR-S1-5p UGAGGGGCCUGAAAUGAGCCUU