Table 1.
The SNPs which form the peaks on chromosomes 5 and 14
SNP ID | Chromosome | Position (hg18) | Test | Minor allele/major allele | Increase in risk, Im/Ip relative to risk allele (SLIC) | P (SLIC) | P (ALSPAC) |
---|---|---|---|---|---|---|---|
rs1353835 | 5 | 39 784 227 | Maternal parent-of-origin effects | C/A | 2.14 | 2.55 × 10−5 | Not tested |
rs1994882 | 5 | 39 841 921 | C/A | 2.441 | 1.56 × 10−6 | 0.001 | |
rs12658486 | 5 | 39 841 974 | G/A | 2.367 | 1.43 × 10−5 | 0.002 | |
rs980306 | 5 | 39 852 592 | A/G | 3.008 | 3.91 × 10−7 | Not tested | |
rs10447141 | 5 | 39 852 924 | A/G | 3.08 | 1.16 × 10−7 | Not tested | |
rs17194068 | 5 | 39 857 074 | G/A | 2.86 | 1.04 × 10−6 | 0.027 | |
rs6895329 | 5 | 39 861 497 | G/A | 2.926 | 1.02 × 10−6 | Not tested | |
rs1816088 | 5 | 39 897 583 | A/C | 2.486 | 4.72 × 10−5 | Not tested | |
rs618051 | 5 | 39 902 670 | C/A | 2.429 | 4.62 × 10−5 | 0.152 | |
rs542708 | 5 | 39 968 025 | A/G | 2.453 | 8.42 × 10−5 | Not tested | |
rs17218399 | 5 | 40 061 719 | G/A | 2.4 | 7.54 × 10−5 | Not tested | |
rs2939378 | 5 | 40 078 002 | G/A | 2.29 | 3.43 × 10−5 | 0.561 | |
rs1567010 | 5 | 40 086 058 | G/A | 2.628 | 9.93 × 10−6 | 0.329 | |
rs11158632 | 14 | 23 839 502 | Paternal parent-of-origin effects | C/A | 3.842 | 4.62 × 10−8 | Not tested |
rs4280164 | 14 | 23 841 124 | A/G | 3.872 | 3.74 × 10−8 | Not tested | |
rs2144494 | 14 | 23 843 226 | G/A | 3.832 | 4.94 × 10−8 | Not tested | |
rs2281472 | 14 | 23 845 685 | G/A | 3.421 | 1.12 × 10−7 | Not tested | |
rs3181384 | 14 | 23 856 815 | A/G | 3.016 | 1.58 × 10−6 | Not tested |
Risk allele.
Association in ALSPAC is in the opposite direction compared to SLIC.