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. 2014 Jul 30;9(7):e103053. doi: 10.1371/journal.pone.0103053

Table 1. avian IAV strains characterized in our study.

Virus Name Subtype Cq Virus isolation Abbreviation Genome sequencing status GenBank Acc. no. Number
A/mallard/CZE/15902-3K/09 N9 33.8 No P/3K partial: NP, NS KC599271-73 1
A/mallard/CZE/15902-4K/09 H6 34.3 No P/4K partial: PB1, H6, MP, NS KC599274-76 2
A/mallard/CZE/15902-9K/09 nd 35.5 No P/9K partial: PB2, PB1, PA, MP, NS KC599277-80 3
A/mallard/CZE/15902-12K/09 H11N2 36.8 No P/12K partial: PB1, PA, H11, NP, N2, MP, NS KC599281-87 4
A/mallard/CZE/15902-14K/09 H6N2 29.7 No P/14K partial: PB2, PB1, PA, H6, NP, MP, NS KC599288-94 5
A/mallard/CZE/15902-17K/09 H6N2 21.3 Yes P/17K entire coding genome HQ244427-34 6
A/mallard/CZE/15902-18K/09++ H11N9 25.8 Yes P/18K_H11 entire coding genome JF682618-25 7
H6N9 P/18K_H6 entire coding genome KC599295-302 8
A/mallard/CZE/15902-23K/09 H6N2 29.6 No P/23K each segment partial KC599309-16 9
A/mallard/CZE/15902-25K/09 H11N9 31.0 No P/25K each segment partial KC599317-24 10
A/mallard/CZE/15902-18T/09++ H6 32.4 No P/18T partial PB2, PB1, PA, H6, NP, MP, NS KC599303-08 11
A/mallard/CZE/15962-1T/10 H6N9 27.4 No H/1T entire coding genome JQ737234-41 12
A/mallard/CZE/15962-4T/10 H6N9 26.6 No H/4T each segment partial KC599325-32 13

The number assigned for each strain corresponds to Figure 2.

CZE, Czech Republic.

T, tracheal swab.

K-cloacal swab.

P, H sampling localities (see the Figures S1 and S2 in File S1).

nd, not determined.

++

samples 18K and 18T did not originate from the same organism.

The Cq values correspond to the reference 20.